| 1st | 12 | Tsugio Matsuda / Sébastien Philippe | Nissan GT-R | Team Impul | 1:34.8780 |
| 2nd | 22 | Michael Krumm / Masataka Yanagida | Nissan GT-R | Nismo | 1:34.8890 |
| 3rd | 3 | Ronnie Quintarelli / Naoki Yokomizo | Nissan GT-R | Hasemi Motorsport | 1:35.0330 |
| 4th | 100 | Yuuji Ide / Shin'ya Hosokawa | Honda NSX (LA-NA2) | Team Kunimitsu | 1:35.1230 |
| 5th | 32 | Loic Duval / Katsuyuki Hiranaka | Honda NSX (LA-NA2) | Nakajima Racing | 1:35.1480 |
| 6th | 17 | Katsutomo Kaneishi / Toshihiro Kaneishi | Honda NSX (LA-NA2) | Real Racing With Leon | 1:35.2970 |
| 7th | 18 | Ryou Michigami / Takashi Kogure | Honda NSX (LA-NA2) | Dome Racing Team | 1:35.3300 |
| 8th | 24 | Joao Paolo de Oliveira / Seiji Ara | Nissan GT-R | Kondo Racing | 1:35.3470 |
| 9th | 1 | Ralph Firman / Takuya Izawa | Honda NSX (LA-NA2) | Autobacs Racing Team Aguri | 1:35.3670 |
| 10th | 38 | Yuuji Tachikawa / Richard Lyons | Lexus SC430 (UZZ40) | Toyota Team Cerumo | 1:35.3820 |
| 11th | 23 | Satoshi Motoyama / Benoit Tréluyer | Nissan GT-R | Nismo | 1:35.5450 |
| 12th | 36 | Juichi Wakisaka / Andre Lotterer | Lexus SC430 (UZZ40) | Petronas Toyota Team Tom's | 1:35.7360 |
| 13th | 6 | Daisuke Itou / Björn Wirdheim | Lexus SC430 (UZZ40) | Eneos Toyota Team Le Mans | 1:36.0640 |
| 14th | 35 | Peter Dumbreck / Tatsuya Kataoka | Lexus SC430 (UZZ40) | Toyota Team Kraft | 1:36.7260 |
| 15th | 25 | Takeshi Tsuchiya / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Toyota Team Tsuchiya | 1:37.3250 |
| 16th | 230 | Satoshi Motoyama | Nissan GT-R | Nismo | 1:37.3370 |
| 17th | 39 | Toranosuke Takagi / André Couto | Lexus SC430 (UZZ40) | Toyota Team Sard | 1:37.6680 |
| 18th | 77 | Tetsuya Yamano / Kota Sasaki | Subaru Impreza (GD) | Cusco Racing | 1:42.7470 |
| 19th | 26 | Nobuteru Taniguchi / Shin'ichi Yamaji | Porsche 996 GT3-RS | Team Taisan With Nishizawa | 1:44.0660 |
| 20th | 43 | Morio Nitta / Shinichi Takagi | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 1:44.4080 |
| 21st | 81 | Takayuki Aoki / Tomonobu Fujii | Nissan Fairlady Z (Z33) | Team Daishin | 1:44.5510 |
| 22nd | 110 | Hidetoshi Mitsusada / Daisuke Ikeda | Porsche 986 Boxster | Arktech Motorsports | 1:44.9120 |
| 23rd | 46 | Kazuki Hoshino / Hironobu Yasuda | Nissan Fairlady Z (Z33) | Mola | 1:44.9270 |
| 24th | 2 | Kazuho Takahashi / Hiroki Katou | Shiden MC/RT-16 | Cars Tokai Dream28 | 1:44.9330 |
| 25th | 11 | Tetsuya Tanaka / Masayuki Ueda | Ferrari F430 (GF-F360) | Jim Gainer | 1:45.0070 |
| 26th | 4 | Ryohei Sakaguchi / Masaki Matsushita | Vemac RD320R | Team Uematsu Nova | 1:45.6350 |
| 27th | 31 | Kyousuke Mineo / Yuuya Sakamoto / Kouhei Hirate / Keisuke Kunimoto | Toyota MR-S (GH-ZZW30) | Apr | 1:45.8310 |
| 28th | 88 | Hideshi Matsuda / Naohiro Furuya | Lamborghini Gallardo RG-3 | JLOC | 1:45.9310 |
| 29th | 87 | Hisashi Wada / Muneyuki Kurihara | Lamborghini Gallardo RG-3 | JLOC | 1:47.9250 |
| 30th | 118 | Takshi Miyamoto / Takashi Ooi | Porsche 996 GT3-RS | Tomei Sports | 1:48.0820 |
| 31st | 666 | Syougo Suhou / Jun'ichirou Yamashita | Vemac RD320R | Avanzza Rosso | 1:48.6370 |