| 19 | Yuuji Kunimoto / Ritomo Miyata | Toyota GR Supra (DB42) | TGR Team WedsSport Bandoh | 1:37.4990 |
| 64 | Takuya Izawa / Hiroki Ootsu | Honda NSX-GT (NC1) | Modulo Nakajima Racing | 1:37.5980 |
| 17 | Koudai Tsukakoshi / Bertrand Baguette | Honda NSX-GT (NC1) | Keihin Real Racing | 1:38.1920 |
| 100 | Naoki Yamamoto / Tadasuke Makino | Honda NSX-GT (NC1) | Team Kunimitsu | 1:38.2090 |
| 16 | Hideki Mutou / Ukyo Sasahara | Honda NSX-GT (NC1) | Team Red Bull Mugen | 1:38.2400 |
| 39 | Heikki Kovalainen / Yuichi Nakayama | Toyota GR Supra (DB42) | TGR Team SARD | 1:38.6820 |
| 8 | Tomoki Nojiri / Nirei Fukuzumi | Honda NSX-GT (NC1) | ARTA | 1:39.0150 |
| 38 | Yuuji Tachikawa / Hiroaki Ishiura | Toyota GR Supra (DB42) | TGR Team Zent Cerumo | 1:39.1910 |
| 14 | Kazuya Oshima / Syou Tsuboi | Toyota GR Supra (DB42) | TGR Team Wako's Rookie | 1:39.4810 |
| 3 | Kouhei Hirate / Katsumasa Chiyo | Nissan GT-R (R35) | NDDP Racing with B-Max | 1:39.6200 |
| 23 | Tsugio Matsuda / Ronnie Quintarelli | Nissan GT-R (R35) | NISMO | 1:39.6950 |
| 12 | Daiki Sasaki / Kazuki Hiramine | Nissan GT-R (R35) | Team Impul | 1:39.7850 |
| 37 | Ryo Hirakawa / Nick Cassidy | Toyota GR Supra (DB42) | TGR Team KeePer Tom's | 1:40.0860 |
| 36 | Yuuhi Sekiguchi / Sacha Fenestraz | Toyota GR Supra (DB42) | TGR Team au Tom's | 1:40.1060 |
| 24 | Mitsunori Takaboshi / Jann Mardenborough | Nissan GT-R (R35) | Kondo Racing | 1:43.3660 |
| 11 | Katsuyuki Hiranaka / Hironobu Yasuda | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:47.6710 |
| 65 | Naoya Gamou / Tougo Suganami | Mercedes-AMG GT3 (C190) | K2 R&D Leon Racing | 1:47.6940 |
| 31 | Kouki Saga / Yuuki Nakayama | Toyota GR Sport Prius PHV (ZVW52) | Apr | 1:47.8380 |
| 25 | Takamitsu Matsui / Kimiya Satou | Porsche 991 GT3 R | Hoppy Team Tsuchiya | 1:48.2530 |
| 360 | Takayuki Aoki / Yuusaku Shibata | Nissan GT-R Nismo GT3 (R35) | Tomei Sports | 1:48.3040 |
| 18 | Takashi Kobayashi / Kousuke Matsuura | Honda NSX-GT3 (NC1) | Team Upgarage | 1:48.4670 |
| 34 | Ryou Michigami / Jake Parsons | Honda NSX-GT3 (NC1) | Modulo Drago Corse | 1:48.8540 |
| 87 | Tsubasa Takahashi / Shin'nosuke Yamada | Lamborghini Huracán GT3 | JLOC | 1:48.9700 |
| 60 | Hiroki Yoshimoto / Syunsuke Kouno | Lexus RC F GT3 (USC10) | LM Corsa | 1:48.9850 |
| 6 | Ryohei Sakaguchi / Kazuto Kotaka | Toyota 86MC (ZN6) | Advics Muta Racing Inging | 1:49.0630 |
| 10 | Kazuki Hoshino / Keishi Ishikawa | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:49.2160 |
| 52 | Hiroki Yoshida / Kohta Kawaai | Toyota GR Supra (DB42) | Saitama Toyopet Green Brave | 1:49.4980 |
| 30 | Hiroaki Nagai / Manabu Orido | Toyota GR Sport Prius PHV (ZVW52) | Apr | 1:49.5110 |
| 50 | Masaki Kano / Ryousei Yamashita | Mercedes-AMG GT3 | Arnage Racing | 1:49.6030 |
| 22 | Hisashi Wada / Masaki Jounai | Mercedes-AMG GT3 | R'Qs Motor Sports | 1:50.6270 |
| 96 | Morio Nitta / Sena Sakaguchi | Lexus RC F GT3 (USC10) | K-tunes Racing | 1:51.0110 |
| 244 | Rintaro Kubo / Atsushi Miyake | Lexus RC F GT3 (USC10) | Max Racing | 1:51.4860 |
| 9 | Tomonobu Fujii / Kei Cozzolino | Aston Martin Vantage GT3 (16A-04) | Pacific D'station Racing | 1:51.7400 |
| 35 | Masahiro Sasaki / Yuui Tsutsumi | Lexus RC F GT3 (USC10) | Arto Ping An Team Thailand | 1:52.2170 |
| 55 | Shinichi Takagi / Toshiki Ooyu | Honda NSX-GT3 (NC1) | ARTA | 1:53.0870 |
| 61 | Takuto Iguchi / Hideki Yamauchi | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 1:55.4180 |
| 88 | Takashi Kogure / Yuya Motojima | Lamborghini Huracán GT3 | JLOC | 1:55.5590 |
| 5 | Natsu Sakaguchi / Yuuya Hiraki | Toyota 86MC (ZN6) | Team Mach | 1:55.8830 |
| 4 | Nobuteru Taniguchi / Tatsuya Kataoka | Mercedes-AMG GT3 | Goodsmile Racing & Team Ukyo | 1:56.0300 |
| 48 | Yuuki Tanaka / Taiyo Iida | Nissan GT-R Nismo GT3 (R35) | Nilzz Racing | 1:56.2000 |
| 7 | Seiji Ara / Tomohide Yamaguchi | BMW M6 GT3 (F13) | BMW Team Satudie x CSL | 1:57.0500 |
| 33 | Shaun Thong / Takeshi Kimura | Audi R8 Coupe LMSFSI quattro (ABA-4SCSPD) | X Works | 1:57.5030 |
| 21 | Shintarou Kawabata / Tsubasa Kondo | Audi R8 Coupe LMSFSI quattro (ABA-4SCSPD) | Audi Team Hitotsuyama | 1:58.3460 |
| 56 | Kiyoto Fujinami / Joao Paolo de Oliveira | Nissan GT-R Nismo GT3 (R35) | Kondo Racing | 1:58.8900 |