| 1st | 18 | Loic Duval / Takashi Kogure | Honda HSV-010 GT (H010) | weider Honda Racing | 1:25.4320 |
| 2nd | 35 | Kazuya Oshima / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Lexus Team Kraft | 1:25.4770 |
| 3rd | 38 | Yuuji Tachikawa / Richard Lyons | Lexus SC430 (UZZ40) | Lexus Team Zent Cerumo | 1:25.6800 |
| 4th | 1 | Juichi Wakisaka / Andre Lotterer | Lexus SC430 (UZZ40) | Lexus Team Petronas Tom's | 1:25.9930 |
| 5th | 6 | Daisuke Itou / Björn Wirdheim | Lexus SC430 (UZZ40) | Lexus Team Le Mans Eneos | 1:26.1720 |
| 6th | 24 | Joao Paolo de Oliveira / Hironobu Yasuda | Nissan GT-R (R35) | Kondo Racing | 1:26.3970 |
| 7th | 12 | Tsugio Matsuda / Ronnie Quintarelli | Nissan GT-R (R35) | Team Impul | 1:26.5180 |
| 8th | 8 | Ralph Firman / Yuuji Ide | Honda HSV-010 GT (H010) | Autobacs Racing Team Aguri | 1:27.0250 |
| 9th | 23 | Satoshi Motoyama / Benoit Tréluyer | Nissan GT-R (R35) | Nismo | 1:27.0770 |
| 10th | 100 | Takuya Izawa / Naoki Yamamoto | Honda HSV-010 GT (H010) | Team Kunimitsu | 1:27.0810 |
| 11th | 32 | Ryou Michigami / Yuuki Nakayama | Honda HSV-010 GT (H010) | Nakajima Racing | 1:27.4720 |
| 12th | 39 | André Couto / Kouhei Hirate | Lexus SC430 (UZZ40) | Lexus Team Sard | 1:28.0440 |
| 13th | 2 | Hiroki Katou / Hiroshi Hamaguchi | Shiden MC/RT-16 | Cars Tokai Dream28 | 1:32.7700 |
| 14th | 86 | Kouji Yamanishi / Yuuhi Sekiguchi | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 1:33.0360 |
| 15th | 7 | Nobuteru Taniguchi / Ryou Orime | Mazda RX-7 (FD3S) | M7 RE Amemiya Racing | 1:33.4260 |
| 16th | 46 | Naoki Yokomizo / Tsubasa Abe | Nissan Fairlady Z (Z33) | Mola | 1:33.5100 |
| 17th | 31 | Kouki Saga / Kousuke Matsuura | Toyota Corolla Axio (NZE141) | Apr | 1:33.5830 |
| 18th | 87 | Hiroyuki Iiri / Yuuya Sakamoto | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 1:33.7780 |
| 19th | 19 | Manabu Orido / Tatsuya Kataoka | Lexus IS350 (GSE21) | Racing Project Bandoh | 1:33.8840 |
| 20th | 3 | Kazuki Hoshino / Masataka Yanagida | Nissan Fairlady Z (Z33) | Hasemi Motor Sport | 1:34.1410 |
| 21st | 88 | Atsushi Yogou / Shin'ya Hosokawa | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 1:34.2930 |
| 22nd | 62 | Tetsuya Yamano / Kota Sasaki | Subaru Legacy B4 (BM9) | R&D Sport | 1:34.3510 |
| 23rd | 5 | Tetsuji Tamanaka / Haruki Kurosawa | Vemac RD408R | Team Mach | 1:34.3940 |
| 24th | 33 | Mitsuhiro Kinoshita / Masami Kageyama | Porsche 997 GT3 RSR | Hankook KTR | 1:34.4390 |
| 25th | 74 | Takuto Iguchi / Yuuji Kunimoto | Toyota Corolla Axio (NZE141) | Apr | 1:34.6230 |
| 26th | 27 | Yutaka Yamagishi / Hiroshi Koizumi | Ferrari F430 GTC | LMP Motorsport | 1:34.7490 |
| 27th | 26 | Igor Sushko / Masayuki Ueda | Porsche 996 GT3-R | Team Taisan | 1:34.9480 |
| 28th | 9 | Taku Bamba / Masahiro Sasaki | Porsche 996 GT3-RSR | Good Smile Racing With Cox | 1:35.4330 |
| 29th | 66 | Hideshi Matsuda / Hiroki Yoshimoto | Aston Martin V8 Vantage GT2 | A Speed | 1:35.6190 |
| 30th | 43 | Morio Nitta / Shinichi Takagi | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 1:35.8160 |
| 31st | 365 | Melvin Choo / Tim Sugden | Mosler MT900M | 365 Thunder Asia Racing | 1:36.0910 |
| 32nd | 11 | Tetsuya Tanaka / Katsuyuki Hiranaka | Ferrari F430 | Jim Gainer | 1:36.1120 |