| 38 | Yuuji Tachikawa / Kouhei Hirate | Lexus SC430 (UZZ40) | Lexus Team Zent Cerumo | 1:56.5940 |
| 36 | Loic Duval / Kazuki Nakajima | Lexus SC430 (UZZ40) | Lexus Team Petronas Tom's | 1:57.0540 |
| 19 | Seiji Ara / André Couto | Lexus SC430 (UZZ40) | Lexus Team WedsSport Bandoh | 1:57.1720 |
| 23 | Satoshi Motoyama / Michael Krumm | Nissan GT-R (R35) | Nismo | 1:57.1790 |
| 35 | Yuuji Kunimoto / Andrea Caldarelli | Lexus SC430 (UZZ40) | Lexus Team KeePer Kraft | 1:57.2680 |
| 39 | Juichi Wakisaka / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Lexus Team Sard | 1:57.2810 |
| 12 | Tsugio Matsuda / Joao Paolo de Oliveira | Nissan GT-R (R35) | Team Impul | 1:57.3990 |
| 100 | Takuya Izawa / Naoki Yamamoto | Honda HSV-010 GT (H010) | Team Kunimitsu | 1:57.4380 |
| 18 | Takashi Kogure / Carlo van Dam | Honda HSV-010 GT (H010) | Weider Honda Racing | 1:57.7230 |
| 24 | Hironobu Yasuda / Björn Wirdheim | Nissan GT-R (R35) | Kondo Racing | 1:57.9130 |
| 1 | Masataka Yanagida / Ronnie Quintarelli | Nissan GT-R (R35) | Mola | 1:58.0440 |
| 17 | Toshihiro Kaneishi / Koudai Tsukakoshi | Honda HSV-010 GT (H010) | Keihin Real Racing | 1:58.0920 |
| 8 | Ralph Firman / Takashi Kobayashi | Honda HSV-010 GT (H010) | Autobacs Racing Team Aguri | 1:58.2150 |
| 32 | Ryou Michigami / Yuuki Nakayama | Honda HSV-010 GT (H010) | Nakajima Racing | 1:58.8460 |
| 33 | Masami Kageyama / Tomonobu Fujii | Porsche 997 GT3 R | Hankook KTR | 2:05.0110 |
| 2 | Kazuho Takahashi / Hiroki Katou | Shiden MC/RT-16 | Cars Tokai Dream28 | 2:05.5150 |
| 88 | Manabu Orido / Takayuki Aoki | Lamborghini Gallardo LP600+ GT3 (09-7) | JLOC | 2:06.2670 |
| 911 | Kyousuke Mineo / Naoki Yokomizo | Porsche 997 GT3 R | Team Taisan Endless | 2:06.4290 |
| 52 | Hironori Takeuchi / Haruki Kurosawa | Mercedes-Benz SLS AMG GT3 | Green Tec & Leon With Shift | 2:06.7940 |
| 3 | Yuuhi Sekiguchi / Katsumasa Chiyo | Nissan GT-R Nismo GT3 (R35) | NDDP Racing | 2:06.9570 |
| 31 | Morio Nitta / Kouki Saga | Toyota Prius (ZVW30) | Apr | 2:06.9570 |
| 87 | Kouji Yamanishi / Hideki Yamauchi | Lamborghini Gallardo LP600+ GT3 (09-7) | JLOC | 2:06.9570 |
| 0 | Nobuteru Taniguchi / Tatsuya Kataoka | BMW Z4 GT3 (E89) | GSR & Studie With Team Ukyo | 2:07.0190 |
| 4 | Taku Bamba / Masahiro Sasaki | BMW Z4 GT3 (E89) | GSR & Studie With Team Ukyo | 2:07.1740 |
| 43 | Shinichi Takagi / Kousuke Matsuura | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 2:07.2080 |
| 61 | Tetsuya Yamano / Kota Sasaki | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 2:07.4800 |
| 27 | Yutaka Yamagishi / Takuto Iguchi | Ferrari F430 GTC | LMP Motorsport | 2:07.9070 |
| 66 | Hiroki Yoshimoto / Kazuki Hoshino | Aston Martin V12 Vantage GT3 | A Speed | 2:08.5550 |
| 11 | Tetsuya Tanaka / Katsuyuki Hiranaka | Audi R8 LMS ultra (AS42AOFGT3) | Gainer | 2:08.6300 |
| 99 | Michael Kim / Hideto Yasuoka / Frank Yu | Audi R8 LMS | Hitotsuyama Racing | 2:08.8480 |
| 69 | Fairuz Fauzy / Hiroki Yoshida | Mosler MT900M | Thunder Asia Racing | 2:08.9240 |
| 30 | Yuuki Iwasaki / Yuuya Sakamoto | Audi R8 LMS ultra (ABA-42BYHF) | Apr | 2:09.0410 |
| 21 | Akihiro Tsuduki / Cyndie Allemann | Audi R8 LMS | Hitotsuyama Racing | 2:09.1510 |
| 360 | Atsushi Tanaka / Takuya Shirasaka | Callaway Corvette Z06R GT3 | Tomei Sports | 2:09.3230 |
| 22 | Hisashi Wada / Masaki Jounai | Vemac RD320R | R'Qs Motorsports | 2:10.5290 |