| 1st | 23 | Satoshi Motoyama / Benoit Tréluyer | Nissan GT-R | Nismo | 1:53.3830 |
| 2nd | 36 | Juichi Wakisaka / Andre Lotterer | Lexus SC430 (UZZ40) | Petronas Toyota Team Tom's | 1:53.7450 |
| 3rd | 100 | Yuuji Ide / Shin'ya Hosokawa | Honda NSX (LA-NA2) | Team Kunimitsu | 1:53.8660 |
| 4th | 18 | Ryou Michigami / Takashi Kogure | Honda NSX (LA-NA2) | Dome Racing Team | 1:54.2060 |
| 5th | 1 | Ralph Firman / Takuya Izawa | Honda NSX (LA-NA2) | Autobacs Racing Team Aguri | 1:54.4090 |
| 6th | 32 | Loïc Duval / Katsuyuki Hiranaka | Honda NSX (LA-NA2) | Nakajima Racing | 1:54.5480 |
| 7th | 17 | Katsutomo Kaneishi / Toshihiro Kaneishi | Honda NSX (LA-NA2) | Real Racing With Leon | 1:54.6720 |
| 8th | 12 | Tsugio Matsuda / Sébastien Philippe | Nissan GT-R | Team Impul | 1:54.7230 |
| 9th | 38 | Yuuji Tachikawa / Richard Lyons | Lexus SC430 (UZZ40) | Toyota Team Cerumo | 1:54.9610 |
| 10th | 6 | Daisuke Itou / Björn Wirdheim | Lexus SC430 (UZZ40) | Eneos Toyota Team Le Mans | 1:55.1600 |
| 11th | 25 | Takeshi Tsuchiya / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Toyota Team Tsuchiya | 1:55.1660 |
| 12th | 24 | Joao Paolo de Oliveira / Seiji Ara | Nissan GT-R | Kondo Racing | 1:55.1670 |
| 13th | 22 | Michael Krumm / Masataka Yanagida | Nissan GT-R | Nismo | 1:55.3950 |
| 14th | 3 | Ronnie Quintarelli / Naoki Yokomizo | Nissan GT-R | Hasemi Motorsport | 1:55.5780 |
| 15th | 35 | Peter Dumbreck / Tatsuya Kataoka | Lexus SC430 (UZZ40) | Toyota Team Kraft | 1:55.5800 |
| 16th | 39 | Toranosuke Takagi / André Couto | Lexus SC430 (UZZ40) | Toyota Team Sard | 1:56.1260 |
| 17th | 2 | Kazuho Takahashi / Hiroki Katou | Shiden MC/RT-16 | Cars Tokai Dream28 | 2:06.7980 |
| 18th | 81 | Takayuki Aoki / Tomonobu Fujii | Nissan Fairlady Z (Z33) | Team Daishin | 2:07.0720 |
| 19th | 7 | Hiroyuki Iiri / Ryou Orime | Mazda RX-7 (FD3S) | RE Amemiya Racing | 2:07.1180 |
| 20th | 26 | Nobuteru Taniguchi / Shin'ichi Yamaji | Porsche 996 GT3-RS | Team Taisan With Nishizawa | 2:07.2310 |
| 21st | 46 | Kazuki Hoshino / Hironobu Yasuda | Nissan Fairlady Z (Z33) | Mola | 2:07.2310 |
| 22nd | 87 | | Lamborghini Gallardo RG-3 | JLOC | 2:07.7370 |
| 23rd | 43 | Morio Nitta / Shinichi Takagi | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 2:07.9210 |
| 24th | 110 | Hidetoshi Mitsusada / Daisuke Ikeda | Porsche 986 Boxster | Arktech Motorsports | 2:07.9310 |
| 25th | 62 | Shinsuke Shibahara / Haruki Kurosawa | Vemac RD408R | Willcom R&D Sport | 2:08.4500 |
| 26th | 4 | Ryohei Sakaguchi / Masaki Matsushita | Vemac RD320R | Team Uematsu Nova | 2:08.5200 |
| 27th | 95 | Kouhei Hirate / Keisuke Kunimoto | Toyota MR-S (GH-ZZW30) | Apr | 2:08.6050 |
| 28th | 77 | Tetsuya Yamano / Kota Sasaki | Subaru Impreza (GD) | Cusco Racing | 2:08.7160 |
| 29th | 11 | Tetsuya Tanaka / Masayuki Ueda | Ferrari F430 (GF-F360) | Jim Gainer | 2:08.8200 |
| 30th | 111 | Hiroshi Koizumi / Masaki Jounai | Porsche 986 Boxster | Arktech Motorsports | 2:09.3720 |
| 31st | 31 | Kyousuke Mineo / Yuuya Sakamoto | Toyota MR-S (GH-ZZW30) | Apr | 2:09.4570 |
| 32nd | 118 | Takshi Miyamoto / Takashi Ooi | Porsche 996 GT3-RS | Tomei Sports | 2:10.0250 |
| 33rd | 16 | Tadao Uematsu | Vemac RD350R | Team Uematsu Nova | 2:11.0320 |
| 34th | 70 | Takehide Maeda / Masayuki Kurihara | Porsche 996 GT3-RS | Team Gaikokuya | 2:11.8020 |
| 35th | 666 | Syougo Suhou / Jun'ichirou Yamashita | Vemac RD320R | Avanzza Rosso | 2:13.0470 |