| 1st | 38 | Yuuji Tachikawa / Richard Lyons | Lexus SC430 (UZZ40) | Lexus Team Zent Cerumo | 1:55.0810 |
| 2nd | 18 | Loïc Duval / Takashi Kogure | Honda HSV-010 GT (H010) | weider Honda Racing | 1:55.1480 |
| 3rd | 23 | Satoshi Motoyama / Benoit Tréluyer | Nissan GT-R (R35) | Nismo | 1:55.3540 |
| 4th | 35 | Kazuya Oshima / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Lexus Team Kraft | 1:55.5310 |
| 5th | 100 | Takuya Izawa / Naoki Yamamoto | Honda HSV-010 GT (H010) | Team Kunimitsu | 1:55.7090 |
| 6th | 17 | Toshihiro Kaneishi / Koudai Tsukakoshi | Honda HSV-010 GT (H010) | Keihin Real Racing | 1:55.7880 |
| 7th | 6 | Daisuke Itou / Björn Wirdheim | Lexus SC430 (UZZ40) | Lexus Team Le Mans Eneos | 1:55.7880 |
| 8th | 12 | Tsugio Matsuda / Ronnie Quintarelli | Nissan GT-R (R35) | Team Impul | 1:55.9790 |
| 9th | 32 | Ryou Michigami / Yuuki Nakayama | Honda HSV-010 GT (H010) | Nakajima Racing | 1:56.4610 |
| 10th | 24 | Joao Paolo de Oliveira / Hironobu Yasuda | Nissan GT-R (R35) | Kondo Racing | 1:56.7120 |
| 11th | 8 | Ralph Firman / Yuuji Ide | Honda HSV-010 GT (H010) | Autobacs Racing Team Aguri | 1:56.8850 |
| 12th | 1 | Juichi Wakisaka / Andre Lotterer | Lexus SC430 (UZZ40) | Lexus Team Petronas Tom's | 1:56.9700 |
| 13th | 39 | André Couto / Kouhei Hirate | Lexus SC430 (UZZ40) | Lexus Team Sard | 1:57.7780 |
| 14th | 2 | Hiroki Katou / Hiroshi Hamaguchi | Shiden MC/RT-16 | Cars Tokai Dream28 | 2:06.5000 |
| 15th | 19 | Manabu Orido / Tatsuya Kataoka | Lexus IS350 (GSE21) | Racing Project Bandoh | 2:07.0650 |
| 16th | 11 | Tetsuya Tanaka / Katsuyuki Hiranaka | Ferrari F430 | Jim Gainer | 2:07.3240 |
| 17th | 3 | Kazuki Hoshino / Masataka Yanagida | Nissan Fairlady Z (Z33) | Hasemi Motor Sport | 2:07.6100 |
| 18th | 46 | Naoki Yokomizo / Tsubasa Abe | Nissan Fairlady Z (Z33) | Mola | 2:07.8120 |
| 19th | 7 | Nobuteru Taniguchi / Ryou Orime | Mazda RX-7 (FD3S) | M7 RE Amemiya Racing | 2:07.8130 |
| 20th | 66 | Hideshi Matsuda / Hiroki Yoshimoto | Aston Martin V8 Vantage GT2 | A Speed | 2:08.0550 |
| 21st | 74 | Takuto Iguchi / Yuuji Kunimoto | Toyota Corolla Axio (NZE141) | Apr | 2:08.3760 |
| 22nd | 43 | Morio Nitta / Shinichi Takagi | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 2:08.5200 |
| 23rd | 86 | Kouji Yamanishi / Yuuhi Sekiguchi | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 2:08.6440 |
| 24th | 31 | Kouki Saga / Kousuke Matsuura | Toyota Corolla Axio (NZE141) | Apr | 2:08.7060 |
| 25th | 27 | Yutaka Yamagishi / Hiroshi Koizumi | Ferrari F430 GTC | LMP Motorsport | 2:09.2200 |
| 26th | 33 | Mitsuhiro Kinoshita / Masami Kageyama | Porsche 997 GT3 RSR | Hankook KTR | 2:09.4350 |
| 27th | 87 | Hiroyuki Iiri / Yuuya Sakamoto | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 2:09.5430 |
| 28th | 9 | Taku Bamba / Masahiro Sasaki | Porsche 996 GT3-RSR | Good Smile Racing With Cox | 2:09.6020 |
| 29th | 26 | Igor Sushko / Masayuki Ueda | Porsche 996 GT3-R | Team Taisan | 2:11.8160 |
| 30th | 666 | Jun'ichirou Yamashita / Takshi Miyamoto | Porsche 986 Boxster | Bomex Rosso | 2:14.0510 |
| 31st | 360 | Keita Sawa / "Takamori.com" | Porsche 996 GT3-RSR | Tomei Sports | 2:16.3170 |