| 46 | Satoshi Motoyama / Masataka Yanagida | Nissan GT-R (R35) | Mola | 1:48.6290 |
| 23 | Tsugio Matsuda / Ronnie Quintarelli | Nissan GT-R (R35) | NISMO | 1:48.8630 |
| 18 | Naoki Yamamoto / Frédéric Makowiecki | Honda NSX Concept-GT (NSX-P) | weider Modulo Dome Racing | 1:49.0020 |
| 12 | Hironobu Yasuda / Joao Paolo de Oliveira | Nissan GT-R (R35) | Team Impul | 1:49.0990 |
| 36 | Kazuki Nakajima / James Rossiter | Lexus RC F | Lexus Team Petronas Tom's | 1:49.4010 |
| 100 | Takashi Kogure / Hideki Mutou | Honda NSX Concept-GT (NSX-P) | Team Kunimitsu | 1:49.4490 |
| 8 | Vitantonio Liuzzi / Kousuke Matsuura | Honda NSX Concept-GT (NSX-P) | Autobacs Racing Team Aguri | 1:49.4820 |
| 17 | Koudai Tsukakoshi / Toshihiro Kaneishi | Honda NSX Concept-GT (NSX-P) | Keihin Real Racing | 1:49.5830 |
| 1 | Yuuji Tachikawa / Kouhei Hirate | Lexus RC F | Lexus Team Zent Cerumo | 1:49.7190 |
| 24 | Michael Krumm / Daiki Sasaki | Nissan GT-R (R35) | Kondo Racing | 1:49.8860 |
| 39 | Hiroaki Ishiura / Oliver Jarvis | Lexus RC F | Lexus Team Sard | 1:49.8880 |
| 19 | Juichi Wakisaka / Yuuhi Sekiguchi | Lexus RC F | Lexus Team WedsSport Bandoh | 1:49.9410 |
| 37 | Daisuke Itou / Andrea Caldarelli | Lexus RC F | Lexus Team KeePer Tom's | 1:50.9610 |
| 6 | Kazuya Oshima / Yuuji Kunimoto | Lexus RC F | Lexus Team Le Mans Eneos | 1:51.3220 |
| 61 | Kota Sasaki / Takuto Iguchi | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 2:00.2790 |
| 3 | Kazuki Hoshino / Lucas Ordoñez / Wolfgang Reip | Nissan GT-R Nismo GT3 (R35) | NDDP Racing | 2:00.3980 |
| 0 | Yuuki Nakayama / Tomoki Nojiri / Ryou Michigami | Honda CR-Z (ZF2) | Team Mugen | 2:00.4240 |
| 31 | Morio Nitta / Kouki Saga / Yuichi Nakayama | Toyota Prius (ZVW30) | Apr | 2:00.4520 |
| 60 | Akira Iida / Hiroki Yoshimoto / Shin'ya Satou | BMW Z4 GT3 (E89) | LM Corsa | 2:00.6430 |
| 10 | Masayuki Ueda / Hideki Yamauchi | Mercedes-Benz SLS AMG GT3 | Gainer | 2:00.7330 |
| 360 | Atsushi Tanaka / Hiroki Yoshida / Ryuuju Fujita | Nissan GT-R Nismo GT3 (R35) | Tomei Sports | 2:00.8980 |
| 65 | Haruki Kurosawa / Tsubasa Kurosawa | Mercedes-Benz SLS AMG GT3 | Leon Racing | 2:01.1070 |
| 55 | Shinichi Takagi / Takashi Kobayashi | Honda CR-Z (ZF2) | Autobacs Racing Team Aguri | 2:01.1450 |
| 7 | Augusto Farfus / Seiji Ara / Jörg Müller | BMW Z4 GT3 (E89) | BMW Sports Trophy Team Studie | 2:01.1960 |
| 9 | Takuya Shirasaka / André Couto / Taiyo Iida | Porsche 997 GT3 R | Pacific Direction Racing | 2:01.2790 |
| 50 | Masaki Kano / Hideto Yasuoka / Nanin Indra-Payoong | Aston Martin V12 Vantage GT3 | Arnage Racing | 2:01.2840 |
| 21 | Richard Lyons / Tomonobu Fujii / Christopher Haase | Audi R8 LMS Ultra | Audi Team Hitotsuyama | 2:01.2930 |
| 22 | Hisashi Wada / Masaki Jounai | Mercedes-Benz SLS AMG GT3 | R'Qs Motorsports | 2:01.3200 |
| 48 | Hiroshi Takamori / Masaki Tanaka / Ryuichiro Tomita | Nissan GT-R Nismo GT3 (R35) | Dijon Racing | 2:01.3650 |
| 88 | Manabu Orido / Takayuki Aoki / Kazuki Hiramine | Lamborghini Gallardo GT3 (22-12226) | JLOC | 2:01.3910 |
| 4 | Nobuteru Taniguchi / Tatsuya Kataoka | BMW Z4 GT3 (E89) | GSR & Studie With Team Ukyo | 2:01.4830 |
| 11 | Katsuyuki Hiranaka / Björn Wirdheim | Mercedes-Benz SLS AMG GT3 | Gainer | 2:01.4860 |
| 67 | Naoki Yokomizo / Shogo Mitsuyama / Kyousuke Mineo | Nissan GT-R Nismo GT3 (R35) | Team Taisan | 2:01.6400 |
| 30 | Yuuki Iwasaki / Masami Kageyama / Tohjiro Azuma | Nissan GT-R Nismo GT3 (R35) | Apr | 2:01.7140 |
| 33 | Akihiro Tsuduki / Jörg Bergmeister / Tim Bergmeister | Porsche 997 GT3 R | Porsche Team KTR | 2:01.7280 |
| 5 | Tetsuji Tamanaka / Naoya Yamano / Kazuya Tsuruta | Nissan GT-R Nismo GT3 (R35) | Team Mach | 2:01.7970 |
| 86 | Shin'ya Hosokawa / Kouji Yamanishi | Lamborghini Gallardo GT3 (09-7) | JLOC | 2:02.9840 |