| 64 | Takuya Izawa / Hiroki Ootsu | Honda NSX-GT (NC1) | Modulo Nakajima Racing | 1:46.1600 |
| 23 | Tsugio Matsuda / Ronnie Quintarelli | Nissan GT-R (R35) | NISMO | 1:46.5000 |
| 38 | Yuuji Tachikawa / Hiroaki Ishiura | Toyota GR Supra (DB42) | TGR Team Zent Cerumo | 1:46.6310 |
| 17 | Koudai Tsukakoshi / Bertrand Baguette | Honda NSX-GT (NC1) | Keihin Real Racing | 1:46.7640 |
| 19 | Yuuji Kunimoto / Ritomo Miyata | Toyota GR Supra (DB42) | TGR Team WedsSport Bandoh | 1:46.9310 |
| 16 | Hideki Mutou / Ukyo Sasahara | Honda NSX-GT (NC1) | Team Red Bull Mugen | 1:46.9920 |
| 14 | Kazuya Oshima / Syou Tsuboi | Toyota GR Supra (DB42) | TGR Team Wako's Rookie | 1:47.3830 |
| 100 | Naoki Yamamoto / Tadasuke Makino | Honda NSX-GT (NC1) | Team Kunimitsu | 1:47.4880 |
| 39 | Heikki Kovalainen / Yuichi Nakayama | Toyota GR Supra (DB42) | TGR Team SARD | 1:47.5770 |
| 3 | Kouhei Hirate / Katsumasa Chiyo | Nissan GT-R (R35) | NDDP Racing with B-Max | 1:47.6310 |
| 37 | Ryō Hirakawa / Nick Cassidy | Toyota GR Supra (DB42) | TGR Team KeePer Tom's | 1:47.6480 |
| 36 | Yuuhi Sekiguchi / Sacha Fenestraz | Toyota GR Supra (DB42) | TGR Team au Tom's | 1:47.7680 |
| 24 | Mitsunori Takaboshi / Jann Mardenborough | Nissan GT-R (R35) | Kondo Racing | 1:48.0520 |
| 8 | Tomoki Nojiri / Nirei Fukuzumi | Honda NSX-GT (NC1) | ARTA | 1:48.1060 |
| 12 | Daiki Sasaki / Kazuki Hiramine | Nissan GT-R (R35) | Team Impul | 1:48.6680 |
| 31 | Kouki Saga / Yuuki Nakayama | Toyota GR Sport Prius PHV (ZVW52) | Apr | 1:58.6210 |
| 11 | Katsuyuki Hiranaka / Hironobu Yasuda | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:58.9110 |
| 244 | Rintaro Kubo / Atsushi Miyake | Lexus RC F GT3 (USC10) | Max Racing | 1:58.9590 |
| 34 | Ryou Michigami / Jake Parsons | Honda NSX-GT3 (NC1) | Modulo Drago Corse | 1:59.0520 |
| 30 | Hiroaki Nagai / Manabu Orido | Toyota GR Sport Prius PHV (ZVW52) | Apr | 1:59.0880 |
| 96 | Morio Nitta / Sena Sakaguchi | Lexus RC F GT3 (USC10) | K-tunes Racing | 1:59.0930 |
| 18 | Takashi Kobayashi / Kousuke Matsuura | Honda NSX-GT3 (NC1) | Team Upgarage | 1:59.1750 |
| 56 | Kiyoto Fujinami / Joao Paolo de Oliveira | Nissan GT-R Nismo GT3 (R35) | Kondo Racing | 1:59.2380 |
| 21 | Shintarou Kawabata / Tsubasa Kondo | Audi R8 Coupe LMSFSI quattro (ABA-4SCSPD) | Audi Team Hitotsuyama | 1:59.3600 |
| 6 | Ryohei Sakaguchi / Kazuto Kotaka | Toyota 86MC (ZN6) | Advics Muta Racing Inging | 1:59.3630 |
| 2 | Hiroki Katou / Masataka Yanagida | Lotus Evora (122) | Cars Tokai Dream28 | 1:59.4060 |
| 52 | Hiroki Yoshida / Kohta Kawaai | Toyota GR Supra (DB42) | Saitama Toyopet Green Brave | 1:59.4370 |
| 7 | Seiji Ara / Tomohide Yamaguchi | BMW M6 GT3 (F13) | BMW Team Satudie x CSL | 1:59.4480 |
| 65 | Naoya Gamou / Tougo Suganami | Mercedes-AMG GT3 (C190) | K2 R&D Leon Racing | 1:59.4740 |
| 5 | Natsu Sakaguchi / Yuuya Hiraki | Toyota 86MC (ZN6) | Team Mach | 1:59.5090 |
| 35 | Masahiro Sasaki / Yuui Tsutsumi | Lexus RC F GT3 (USC10) | Arto Ping An Team Thailand | 1:59.5450 |
| 10 | Kazuki Hoshino / Keishi Ishikawa | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:59.6270 |
| 9 | Tomonobu Fujii / Kei Cozzolino | Aston Martin Vantage GT3 (16A-04) | Pacific D'station Racing | 1:59.6570 |
| 55 | Shinichi Takagi / Toshiki Ooyu | Honda NSX-GT3 (NC1) | ARTA | 1:59.7350 |
| 61 | Takuto Iguchi / Hideki Yamauchi | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 1:59.8020 |
| 360 | Takayuki Aoki / Yuusaku Shibata | Nissan GT-R Nismo GT3 (R35) | Tomei Sports | 2:00.0350 |
| 4 | Nobuteru Taniguchi / Tatsuya Kataoka | Mercedes-AMG GT3 | Goodsmile Racing & Team Ukyo | 2:00.2460 |
| 88 | Takashi Kogure / Yuya Motojima | Lamborghini Huracán GT3 | JLOC | 2:00.2800 |
| 60 | Hiroki Yoshimoto / Syunsuke Kouno | Lexus RC F GT3 (USC10) | LM Corsa | 2:01.4350 |
| 50 | Masaki Kano / Ryousei Yamashita | Mercedes-AMG GT3 | Arnage Racing | 2:01.4900 |
| 87 | Tsubasa Takahashi / Shin'nosuke Yamada | Lamborghini Huracán GT3 | JLOC | 2:01.7300 |
| 33 | Shaun Thong / Takeshi Kimura | Audi R8 Coupe LMSFSI quattro (ABA-4SCSPD) | X Works | 2:02.0090 |
| 48 | Yuuki Tanaka / Taiyo Iida | Nissan GT-R Nismo GT3 (R35) | Nilzz Racing | 2:02.4140 |
| 22 | Hisashi Wada / Masaki Jounai | Mercedes-AMG GT3 | R'Qs Motor Sports | 2:03.1350 |
| 25 | Takamitsu Matsui / Kimiya Satou | Porsche 991 GT3 R | Hoppy Team Tsuchiya | 2:14.2170 |