| 19 | Yuuji Kunimoto / Ritomo Miyata | Toyota GR Supra (DB42) | TGR Team WedsSport Bandoh | 1:45.0360 |
| 64 | Takuya Izawa / Hiroki Ootsu | Honda NSX-GT (NC1) | Modulo Nakajima Racing | 1:45.2180 |
| 8 | Tomoki Nojiri / Nirei Fukuzumi | Honda NSX-GT (NC1) | ARTA | 1:45.4780 |
| 12 | Daiki Sasaki / Kazuki Hiramine | Nissan GT-R (R35) | Team Impul | 1:45.6980 |
| 3 | Kouhei Hirate / Katsumasa Chiyo | Nissan GT-R (R35) | NDDP Racing with B-Max | 1:45.9170 |
| 100 | Naoki Yamamoto / Tadasuke Makino | Honda NSX-GT (NC1) | Team Kunimitsu | 1:46.0050 |
| 38 | Yuuji Tachikawa / Hiroaki Ishiura | Toyota GR Supra (DB42) | TGR Team Zent Cerumo | 1:46.2150 |
| 16 | Hideki Mutou / Ukyo Sasahara | Honda NSX-GT (NC1) | Team Red Bull Mugen | 1:46.2540 |
| 39 | Heikki Kovalainen / Yuichi Nakayama | Toyota GR Supra (DB42) | TGR Team SARD | 1:46.3240 |
| 17 | Koudai Tsukakoshi / Bertrand Baguette | Honda NSX-GT (NC1) | Keihin Real Racing | 1:46.5290 |
| 14 | Kazuya Oshima / Syou Tsuboi | Toyota GR Supra (DB42) | TGR Team Wako's Rookie | 1:46.6730 |
| 37 | Ryō Hirakawa / Nick Cassidy | Toyota GR Supra (DB42) | TGR Team KeePer Tom's | 1:46.7960 |
| 36 | Yuuhi Sekiguchi / Sacha Fenestraz | Toyota GR Supra (DB42) | TGR Team au Tom's | 1:46.8050 |
| 24 | Mitsunori Takaboshi / Jann Mardenborough | Nissan GT-R (R35) | Kondo Racing | 1:46.9540 |
| 96 | Morio Nitta / Sena Sakaguchi | Lexus RC F GT3 (USC10) | K-tunes Racing | 1:56.4590 |
| 30 | Hiroaki Nagai / Manabu Orido | Toyota GR Sport Prius PHV (ZVW52) | Apr | 1:56.4960 |
| 7 | Seiji Ara / Tomohide Yamaguchi | BMW M6 GT3 (F13) | BMW Team Satudie x CSL | 1:57.0000 |
| 31 | Kouki Saga / Yuuki Nakayama | Toyota GR Sport Prius PHV (ZVW52) | Apr | 1:57.0340 |
| 21 | Shintarou Kawabata / Tsubasa Kondo | Audi R8 LMS FSI quattro (ABA-4SCSPD) | Audi Team Hitotsuyama | 1:57.0530 |
| 360 | Takayuki Aoki / Takuya Otaki | Nissan GT-R Nismo GT3 (R35) | Tomei Sports | 1:57.1830 |
| 52 | Hiroki Yoshida / Kohta Kawaai | Toyota GR Supra (DB42) | Saitama Toyopet Green Brave | 1:57.2900 |
| 60 | Hiroki Yoshimoto / Syunsuke Kouno | Lexus RC F GT3 (USC10) | LM Corsa | 1:57.4820 |
| 55 | Shinichi Takagi / Toshiki Ooyu | Honda NSX-GT3 (NC1) | ARTA | 1:57.5680 |
| 18 | Takashi Kobayashi / Kousuke Matsuura | Honda NSX-GT3 (NC1) | Team Upgarage | 1:57.6150 |
| 9 | Tomonobu Fujii / Kei Cozzolino | Aston Martin Vantage GT3 (16A-04) | Pacific D'station Racing | 1:57.6250 |
| 56 | Kiyoto Fujinami / Joao Paolo de Oliveira | Nissan GT-R Nismo GT3 (R35) | Kondo Racing | 1:57.6400 |
| 61 | Hideki Yamauchi / Takuto Iguchi | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 1:57.6660 |
| 34 | Ryou Michigami / Jake Parsons | Honda NSX-GT3 (NC1) | Modulo Drago Corse | 1:57.6820 |
| 4 | Nobuteru Taniguchi / Tatsuya Kataoka | Mercedes-AMG GT3 | Goodsmile Racing & Team Ukyo | 1:57.7220 |
| 11 | Katsuyuki Hiranaka / Hironobu Yasuda | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:57.7810 |
| 5 | Natsu Sakaguchi / Yuuya Hiraki | Toyota 86MC (ZN6) | Team Mach | 1:58.0330 |
| 35 | Sean Walkinshaw / Mathias Beche | Lexus RC F GT3 (USC10) | Arto Ping An Team Thailand | 1:58.0550 |
| 2 | Hiroki Katou / Masataka Yanagida | Lotus Evora (122) | Cars Tokai Dream28 | 1:58.1290 |
| 6 | Ryohei Sakaguchi / Kazuto Kotaka | Toyota 86MC (ZN6) | Advics Muta Racing Inging | 1:58.1950 |
| 87 | Tsubasa Takahashi / Shin'nosuke Yamada | Lamborghini Huracán GT3 Evo | JLOC | 1:58.2470 |
| 65 | Naoya Gamou / Tougo Suganami | Mercedes-AMG GT3 Evo | K2 R&D Leon Racing | 1:58.3220 |
| 25 | Takamitsu Matsui / Kimiya Satou | Porsche 991 GT3 R | Hoppy Team Tsuchiya | 1:58.3960 |
| 10 | Kazuki Hoshino / Keishi Ishikawa | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:58.4310 |
| 88 | Takashi Kogure / Yuya Motojima | Lamborghini Huracán GT3 | JLOC | 1:58.5680 |
| 33 | Shaun Thong / Kota Sasaki | Audi R8 LMS FSI quattro (ABA-4SCSPD) | X Works | 1:59.0200 |
| 48 | Yuuki Tanaka / Yuusaku Shibata | Nissan GT-R Nismo GT3 (R35) | Nilzz Racing | 1:59.0580 |
| 50 | Masaki Kano / Hideto Yasuoka | Mercedes-AMG GT3 Evo | Arnage Racing | 1:59.8020 |