| 64 | Takuya Izawa / Hiroki Ootsu | Honda NSX-GT (NC1) | Modulo Nakajima Racing | 1:44.7330 |
| 16 | Ukyo Sasahara / Toshiki Ooyu | Honda NSX-GT (NC1) | Team Red Bull Mugen | 1:45.5900 |
| 24 | Mitsunori Takaboshi / Daiki Sasaki | Nissan GT-R (R35) | Kondo Racing | 1:45.7270 |
| 23 | Tsugio Matsuda / Ronnie Quintarelli | Nissan GT-R (R35) | NISMO | 1:45.7610 |
| 8 | Tomoki Nojiri / Nirei Fukuzumi | Honda NSX-GT (NC1) | ARTA | 1:45.9270 |
| 3 | Kouhei Hirate / Katsumasa Chiyo | Nissan GT-R (R35) | NDDP Racing with B-Max | 1:46.0220 |
| 17 | Koudai Tsukakoshi / Bertrand Baguette | Honda NSX-GT (NC1) | Astemo Real Racing | 1:46.0280 |
| 12 | Kazuki Hiramine / Nobuharu Matsushita | Nissan GT-R (R35) | Team Impul | 1:46.1530 |
| 19 | Yuuji Kunimoto / Ritomo Miyata | Toyota GR Supra (DB42) | TGR Team WedsSport Bandoh | 1:46.1770 |
| 38 | Yuuji Tachikawa / Hiroaki Ishiura | Toyota GR Supra (DB42) | TGR Team Zent Cerumo | 1:46.2350 |
| 1 | Naoki Yamamoto / Tadasuke Makino | Honda NSX-GT (NC1) | Team Kunimitsu | 1:46.3100 |
| 36 | Yuuhi Sekiguchi / Syou Tsuboi | Toyota GR Supra (DB42) | TGR Team au Tom's | 1:46.3260 |
| 39 | Heikki Kovalainen / Yuichi Nakayama | Toyota GR Supra (DB42) | TGR Team SARD | 1:46.3770 |
| 37 | Ryō Hirakawa / Sena Sakaguchi | Toyota GR Supra (DB42) | TGR Team KeePer Tom's | 1:46.5140 |
| 14 | Kazuya Oshima / Kenta Yamashita | Toyota GR Supra (DB42) | TGR Team Eneos Rookie | 1:46.7360 |
| 244 | Atsushi Miyake / Yuui Tsutsumi | Toyota GR Supra (DB42) | Max Racing | 1:57.5670 |
| 10 | Kazuki Hoshino / Keishi Ishikawa | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:57.8660 |
| 61 | Takuto Iguchi / Hideki Yamauchi | Subaru BRZ GT300 | R&D Sport | 1:58.2050 |
| 7 | Seiji Ara / Tomohide Yamaguchi | BMW M6 GT3 (F13) | BMW Team Satudie x CSL | 1:58.3130 |
| 360 | Takayuki Aoki / Yudai Uchida | Nissan GT-R Nismo GT3 (R35) | Tomei Sports | 1:58.3490 |
| 34 | Ryou Michigami / Shogo Mitsuyama | Honda NSX-GT3 (NC1) | Yogibo Drago Corse | 1:58.3500 |
| 2 | Hiroki Katou / Ryohei Sakaguchi | Lotus Evora (122) | Muta Racing Inging | 1:58.3640 |
| 48 | Yuuki Tanaka / Ryuichiro Tomita | Nissan GT-R Nismo GT3 (R35) | Nilzz Racing | 1:58.5560 |
| 88 | Takashi Kogure / Yuya Motojima | Lamborghini Huracán GT3 | JLOC | 1:58.7190 |
| 4 | Nobuteru Taniguchi / Tatsuya Kataoka | Mercedes-AMG GT3 | Goodsmile Racing & Team Ukyo | 1:58.7660 |
| 21 | Shintarou Kawabata / Takuro Shinohara | Audi R8 LMS FSI quattro (ABA-4SCSPD) | Audi Team Hitotsuyama | 1:58.7870 |
| 30 | Hiroaki Nagai / Manabu Orido | Toyota GR Sport Prius PHV (ZVW52) | Apr | 1:58.7950 |
| 6 | Satoshi Motoyama / Yoshiaki Katayama | Audi R8 Coupe V10 plus 5.2 FSI quattro | Team LeMans with Motoyama Racing | 1:58.9400 |
| 35 | Sean Walkinshaw / Giuliano Alesi | Lexus RC F GT3 (USC10) | Arto Team Thailand | 1:58.9650 |
| 11 | Katsuyuki Hiranaka / Hironobu Yasuda | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:58.9810 |
| 60 | Hiroki Yoshimoto / Syunsuke Kouno | Toyota GR Supra (DB42) | LM Corsa | 1:59.0130 |
| 9 | Kei Cozzolino / Naoki Yokomizo | Ferrari 488 GT3 Evo | Pacific Carguy Racing | 1:59.0510 |
| 87 | Kousuke Matsuura / Natsu Sakaguchi | Lamborghini Huracán GT3 Evo | JLOC | 1:59.0610 |
| 5 | Yuuya Hiraki / Reiji Hiraki | Toyota 86MC (ZN6) | Team Mach | 1:59.1320 |
| 25 | Takamitsu Matsui / Kimiya Satou | Porsche 991 GT3 R | Hoppy Team Tsuchiya | 1:59.1870 |
| 56 | Kiyoto Fujinami / Joao Paolo de Oliveira | Nissan GT-R Nismo GT3 (R35) | Kondo Racing | 1:59.2050 |
| 52 | Hiroki Yoshida / Taku Bamba | Toyota GR Supra (DB42) | Saitama Toyopet Green Brave | 1:59.3480 |
| 55 | Shinichi Takagi / Ren Satou | Honda NSX-GT3 (NC1) | ARTA | 1:59.7640 |
| 31 | Kouki Saga / Yuuki Nakayama | Toyota GR Sport Prius PHV (ZVW52) | Apr | 2:00.0660 |
| 65 | Naoya Gamou / Tougo Suganami | Mercedes-AMG GT3 (C190) | K2 R&D Leon Racing | 2:00.1760 |
| 50 | Masaki Kano / Masataka Yanagida | Mercedes-AMG GT3 | Arnage Racing | 2:00.2340 |
| 22 | Hisashi Wada / Masaki Jounai | Mercedes-AMG GT3 Evo | R'Qs Motor Sports | 2:02.0020 |
| 18 | Takashi Kobayashi / Teppei Natori | Honda NSX-GT3 (NC1) | Team Upgarage | 2:03.0740 |