| 16 | Ukyo Sasahara / Toshiki Ooyu | Honda NSX-GT (NC1) | Team Red Bull Mugen | 1:45.2190 |
| 19 | Yuuji Kunimoto / Sena Sakaguchi | Toyota GR Supra (DB42) | TGR Team WedsSport Bandoh | 1:45.2440 |
| 23 | Ronnie Quintarelli / Tsugio Matsuda | Nissan GT-R (R35) | NISMO | 1:45.2820 |
| 38 | Yuuji Tachikawa / Hiroaki Ishiura | Toyota GR Supra (DB42) | TGR Team Zent Cerumo | 1:45.3650 |
| 17 | Koudai Tsukakoshi / Nobuharu Matsushita | Honda NSX-GT (NC1) | Astemo Real Racing | 1:45.7350 |
| 24 | Daiki Sasaki / Kouhei Hirate | Nissan GT-R (R35) | Kondo Racing | 1:45.7530 |
| 100 | Naoki Yamamoto / Tadasuke Makino | Honda NSX-GT (NC1) | Team Kunimitsu | 1:45.7750 |
| 39 | Yuuhi Sekiguchi / Yuichi Nakayama | Toyota GR Supra (DB42) | TGR Team SARD | 1:45.8240 |
| 3 | Katsumasa Chiyo / Mitsunori Takaboshi | Nissan GT-R (R35) | NDDP Racing | 1:46.0080 |
| 8 | Tomoki Nojiri / Nirei Fukuzumi | Honda NSX-GT (NC1) | ARTA | 1:46.0250 |
| 37 | Sacha Fenestraz / Ritomo Miyata | Toyota GR Supra (DB42) | TGR Team KeePer Tom's | 1:46.0550 |
| 36 | Syou Tsuboi / Giuliano Alesi | Toyota GR Supra (DB42) | TGR Team au Tom's | 1:46.1030 |
| 64 | Takuya Izawa / Hiroki Ootsu | Honda NSX-GT (NC1) | Modulo Nakajima Racing | 1:46.1540 |
| 14 | Kazuya Oshima / Kenta Yamashita | Toyota GR Supra (DB42) | TGR Team Eneos Rookie | 1:46.2110 |
| 12 | Kazuki Hiramine / Bertrand Baguette | Nissan GT-R (R35) | Team Impul | 1:46.2600 |
| 55 | Hideki Mutou / Iori Kimura | Honda NSX-GT3 (NC1) | ARTA | 1:57.7070 |
| 6 | Yoshiaki Katayama / Roberto Merhi | Audi R8 Coupe V10 plus 5.2 FSI quattro | Team LeMans | 1:57.7980 |
| 244 | Kimiya Satou / Atsushi Miyake | Toyota GR Supra (DB42) | Max Racing | 1:57.8510 |
| 9 | Kei Cozzolino / Naoki Yokomizo | Ferrari 488 GT3 Evo | Pacific Carguy Racing | 1:57.9190 |
| 56 | Kiyoto Fujinami / Joao Paolo de Oliveira | Nissan GT-R Nismo GT3 (R35) | Kondo Racing | 1:57.9850 |
| 2 | Hiroki Katou / Yuui Tsutsumi | Toyota GR86 (ZN8) | Muta Racing Inging | 1:58.0570 |
| 96 | Morio Nitta / Shinichi Takagi | Lexus RC F GT3 (USC10) | K-tunes Racing | 1:58.0720 |
| 18 | Takashi Kobayashi / Kaku Ohta | Honda NSX-GT3 (NC1) | Team Upgarage | 1:58.1340 |
| 87 | Kousuke Matsuura / Natsu Sakaguchi | Lamborghini Huracán GT3 Evo | JLOC | 1:58.2340 |
| 88 | Takashi Kogure / Yuya Motojima | Lamborghini Huracán GT3 Evo | JLOC | 1:58.3040 |
| 20 | Katsuyuki Hiranaka / Eijirou Shimizu / Shin'nosuke Yamada | Toyota GR86 (ZN8) | Shade Racing | 1:58.3460 |
| 10 | Riki Ookusa / Ryuichiro Tomita / Yuusuke Shiotsu | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:58.3880 |
| 50 | Masaki Kano / Ryohei Sakaguchi / Takeshi Suehiro | Toyota 86MC (ZN6) | Arnage Racing | 1:58.5320 |
| 4 | Nobuteru Taniguchi / Tatsuya Kataoka | Mercedes-AMG GT3 Evo | Goodsmile Racing & Team Ukyo | 1:58.6460 |
| 60 | Hiroki Yoshimoto / Syunsuke Kouno | Toyota GR Supra (DB42) | LM Corsa | 1:58.7680 |
| 11 | Hironobu Yasuda / Keishi Ishikawa | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:58.9000 |
| 5 | Yuusuke Tomibayashi / Reiji Hiraki | Toyota 86MC (ZN6) | Team Mach | 1:58.9350 |
| 25 | Takamitsu Matsui / Seita Nonaka | Toyota GR Supra (DB42) | Hoppy Team Tsuchiya | 1:58.9440 |
| 65 | Naoya Gamou / Takuro Shinohara | Mercedes-AMG GT3 Evo | K2 R&D Leon Racing | 1:58.9840 |
| 52 | Hiroki Yoshida / Kohta Kawaai | Toyota GR Supra (DB42) | Saitama Toyopet Green Brave | 1:59.0310 |
| 61 | Takuto Iguchi / Hideki Yamauchi | Subaru BRZ GT300 | R&D Sport | 1:59.1380 |
| 30 | Manabu Orido / Hibiki Taira / Yuta Kamimura | Toyota GR Sport Prius PHV (ZVW52) | Apr | 1:59.4450 |
| 7 | Augusto Farfus / Seiji Ara / Tsubasa Kondo | BMW M4 GT3 (3BA-52AZ30) | BMW Team Satudie x CSL | 1:59.5080 |
| 360 | Takayuki Aoki / Atsushi Tanaka / Yuusaku Shibata | Nissan GT-R Nismo GT3 (R35) | Tomei Sports | 1:59.7230 |
| 31 | Kouki Saga / Yuuki Nakayama / Kazuto Kotaka | Toyota GR Sport Prius PHV (ZVW52) | Apr | 1:59.9270 |
| 48 | Taiyo Iida / Yuuki Tanaka / Masaya Kouno | Nissan GT-R Nismo GT3 (R35) | Nilzz Racing | 2:01.8090 |
| 22 | Hisashi Wada / Masaki Jounai | Mercedes-AMG GT3 Evo | R'Qs Motor Sports | 2:02.2080 |