| 17 | Koudai Tsukakoshi / Bertrand Baguette | Honda NSX-GT (NC1) | Keihin Real Racing | 1:33.2620 |
| 8 | Tomoki Nojiri / Takuya Izawa | Honda NSX-GT (NC1) | ARTA | 1:33.9670 |
| 24 | Mitsunori Takaboshi / Jann Mardenborough | Nissan GT-R (R35) | Kondo Racing | 1:33.9780 |
| 36 | Kazuki Nakajima / Yuuhi Sekiguchi | Lexus LC500 (URZ100) | Lexus Team au Tom's | 1:34.2380 |
| 39 | Heikki Kovalainen / Yuichi Nakayama | Lexus LC500 (URZ100) | Lexus Team SARD | 1:34.7250 |
| 3 | Kouhei Hirate / Frédéric Makowiecki | Nissan GT-R (R35) | NDDP Racing with B-Max | 1:34.8550 |
| 37 | Ryō Hirakawa / Nick Cassidy | Lexus LC500 (URZ100) | Lexus Team KeePer Tom's | 1:34.9350 |
| 38 | Yuuji Tachikawa / Hiroaki Ishiura | Lexus LC500 (URZ100) | Lexus Team Zent Cerumo | 1:35.0870 |
| 25 | Takamitsu Matsui / Kimiya Satou | Toyota 86MC (ZN6) | Tsuchiya Engineering | 1:44.4230 |
| 52 | Shigekazu Wakisaka / Hiroki Yoshida | Toyota Mark X (GRX133) | Saitama Toyopet Green Brave | 1:44.5200 |
| 7 | Tomonobu Fujii / Joao Paolo de Oliveira | Aston Martin Vantage GT3 (ABA-AM601) | D'Station Racing AMR | 1:44.6530 |
| 61 | Takuto Iguchi / Hideki Yamauchi | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 1:45.0730 |
| 33 | Shaun Thong / Shinya Michimi | Nissan GT-R Nismo GT3 (R35) | X Works | 1:45.3530 |
| 4 | Nobuteru Taniguchi / Tatsuya Kataoka | Mercedes-AMG GT3 (C190) | Goodsmile Racing & Team Ukyo | 1:45.3780 |
| 55 | Shinichi Takagi / Nirei Fukuzumi | Honda NSX-GT3 (NC1) | ARTA | 1:45.3840 |
| 96 | Morio Nitta / Sena Sakaguchi | Lexus RC F GT3 (USC10) | K-tunes Racing | 1:45.3950 |
| 56 | Kazuki Hiramine / Sacha Fenestraz | Nissan GT-R Nismo GT3 (R35) | Kondo Racing | 1:45.4090 |
| 10 | Kazuki Hoshino / Keishi Ishikawa | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:45.4850 |
| 21 | Richard Lyons / Ryuichiro Tomita | Audi R8 LMS (ABA-4SCSPD) | Audi Team Hitotsuyama | 1:45.5540 |
| 60 | Hiroki Yoshimoto / Ritomo Miyata | Lexus RC F GT3 (USC10) | LM Corsa | 1:45.5790 |
| 65 | Naoya Gamou / Tougo Suganami | Mercedes-AMG GT3 (C190) | K2 R&D Leon Racing | 1:46.0560 |
| 5 | Natsu Sakaguchi / Yuuya Hiraki | Toyota 86MC (ZN6) | Team Mach | 1:46.9140 |
| 360 | Takayuki Aoki / Atsushi Tanaka | Nissan GT-R Nismo GT3 (R35) | Tomei Sports | 1:47.6790 |
| 2 | Kazuho Takahashi / Hiroki Katou | Lotus Evora (122) | Cars Tokai Dream28 | 1:48.4910 |