| 16 | Ukyo Sasahara / Toshiki Ooyu | Honda NSX-GT (NC1) | Team Red Bull Mugen | 1:31.7700 |
| 14 | Kenta Yamashita / Kazuya Oshima | Toyota GR Supra (DB42) | TGR Team Eneos Rookie | 1:31.7770 |
| 64 | Takuya Izawa / Hiroki Ootsu | Honda NSX-GT (NC1) | Modulo Nakajima Racing | 1:32.0680 |
| 8 | Tomoki Nojiri / Nirei Fukuzumi | Honda NSX-GT (NC1) | ARTA | 1:32.1280 |
| 23 | Tsugio Matsuda / Ronnie Quintarelli | Nissan GT-R (R35) | NISMO | 1:32.3350 |
| 37 | Ryō Hirakawa / Sacha Fenestraz | Toyota GR Supra (DB42) | TGR Team KeePer Tom's | 1:32.7280 |
| 17 | Koudai Tsukakoshi / Bertrand Baguette | Honda NSX-GT (NC1) | Astemo Real Racing | 1:32.8280 |
| 39 | Heikki Kovalainen / Yuichi Nakayama | Toyota GR Supra (DB42) | TGR Team SARD | 1:33.0780 |
| 31 | Yuuki Nakayama / Kouki Saga | Toyota GR Sport Prius PHV (ZVW52) | Apr | 1:42.0390 |
| 61 | Takuto Iguchi / Hideki Yamauchi | Subaru BRZ GT300 | R&D Sport | 1:42.3160 |
| 52 | Hiroki Yoshida / Kohta Kawaai | Toyota GR Supra (DB42) | Saitama Toyopet Green Brave | 1:42.7270 |
| 65 | Naoya Gamou / Tougo Suganami | Mercedes-AMG GT3 (C190) | K2 R&D Leon Racing | 1:43.1120 |
| 96 | Morio Nitta / Sena Sakaguchi | Lexus RC F GT3 (USC10) | K-tunes Racing | 1:43.3910 |
| 60 | Hiroki Yoshimoto / Syunsuke Kouno | Toyota GR Supra (DB42) | LM Corsa | 1:43.6050 |
| 88 | Takashi Kogure / Yuya Motojima | Lamborghini Huracán GT3 | JLOC | 1:43.7480 |
| 2 | Hiroki Katou / Ryohei Sakaguchi | Lotus Evora (122) | Muta Racing Inging | 1:43.8690 |
| 5 | Yuuya Hiraki / Reiji Hiraki | Toyota 86MC (ZN6) | Team Mach | 1:44.1100 |
| 18 | Takashi Kobayashi / Teppei Natori | Honda NSX-GT3 (NC1) | Team Upgarage | 1:44.1130 |
| 21 | Shintarou Kawabata / Takuro Shinohara | Audi R8 LMS FSI quattro (ABA-4SCSPD) | Audi Team Hitotsuyama | 1:44.1630 |
| 6 | Satoshi Motoyama / Yoshiaki Katayama | Audi R8 Coupe V10 plus 5.2 FSI quattro | Team LeMans with Motoyama Racing | 1:44.2230 |
| 30 | Hiroaki Nagai / Manabu Orido | Toyota GR Sport Prius PHV (ZVW52) | Apr | 1:44.5780 |
| 87 | Kousuke Matsuura / Natsu Sakaguchi | Lamborghini Huracán GT3 Evo | JLOC | 1:44.5780 |
| 10 | Kazuki Hoshino / Keishi Ishikawa | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:45.3260 |
| 9 | Takeshi Kimura / Kei Cozzolino | Ferrari 488 GT3 Evo | Pacific Carguy Racing | 1:45.6540 |