| 19 | Yuuhi Sekiguchi / Yuuji Kunimoto | Lexus RC F (USC10) | Lexus Team WedsSport Bandoh | 1:24.3070 |
| 15 | Hideki Mutou / Tadasuke Makino | Honda NSX Concept-GT (NSX-P) | Drago Modulo Honda Racing | 1:24.3400 |
| 12 | Hironobu Yasuda / Joao Paolo de Oliveira | Nissan GT-R Nismo GT500 (R35) | Team Impul | 1:24.4660 |
| 8 | Kousuke Matsuura / Tomoki Nojiri | Honda NSX Concept-GT (NSX-P) | Autobacs Racing Team Aguri | 1:24.4830 |
| 46 | Satoshi Motoyama / Katsumasa Chiyo | Nissan GT-R Nismo GT500 (R35) | Mola | 1:24.5930 |
| 6 | Kazuya Oshima / Andrea Caldarelli | Lexus RC F (USC10) | Lexus Team Le Mans Wako's | 1:24.8090 |
| 37 | James Rossiter / Ryo Hirakawa | Lexus RC F (USC10) | Lexus Team Tom's | 1:24.9370 |
| 64 | Daisuke Nakajima / Bertrand Baguette | Honda NSX Concept-GT (NSX-P) | Nakajima Racing | 1:24.9680 |
| 25 | Takeshi Tsuchiya / Takamitsu Matsui | Toyota 86 MC (MC86) | Vivac Team Tsuchiya | 1:32.1020 |
| 3 | Kazuki Hoshino / Jann Mardenborough | Nissan GT-R Nismo GT3 (R35) | NDDP Racing | 1:32.7970 |
| 0 | André Couto / Ryuichiro Tomita | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:32.9490 |
| 18 | Yuuki Nakayama / Shin'nosuke Yamada | Toyota 86 MC (86/ZN6) | Team Upgarage With Bandoh | 1:32.9810 |
| 55 | Shinichi Takagi / Takashi Kobayashi | BMW M6 GT3 (F13) | Autobacs Racing Team Aguri | 1:33.0770 |
| 88 | Manabu Orido / Kazuki Hiramine | Lamborghini Huracán GT3 | JLOC | 1:33.1830 |
| 11 | Katsuyuki Hiranaka / Björn Wirdheim | Mercedes-AMG GT3 | Gainer | 1:33.2000 |
| 31 | Kouki Saga / Yuichi Nakayama | Toyota Prius (ZVW50) | Apr | 1:33.3630 |
| 4 | Nobuteru Taniguchi / Tatsuya Kataoka | Mercedes-AMG GT3 | Goodsmile Racing & Team Ukyo | 1:33.6720 |
| 65 | Haruki Kurosawa / Naoya Gamou | Mercedes-AMG GT3 (197) | K2 R&D Leon Racing | 1:33.7810 |
| 61 | Takuto Iguchi / Hideki Yamauchi | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 1:33.8100 |
| 87 | Shin'ya Hosokawa / Kimiya Satou | Lamborghini Huracán GT3 | JLOC | 1:34.0250 |
| 63 | Adrian Zaugg / Naoki Yokomizo | Lamborghini Huracán GT3 | Lamboghini Team Direction | 1:34.3640 |
| 35 | Nattavude Charoensukhawatana / Piti Bhirombhakdi | Toyota 86 (86/ZN6) | Toyota Team Thailand | 1:36.7590 |