| 1st | 33 | Ukyou Katayama / Masahiko Kondou | Toyota Supra (JZA80) | Toyota Team Cerumo With Cerumo | 1:25.2680 |
| 2nd | 23 | Erik Comas / Masami Kageyama | Nissan Skyline GT-R (BNR34) | NISMO | 1:25.3110 |
| 3rd | 6 | Juichi Wakisaka / Hideki Noda | Toyota Supra (JZA80) | Esso Toyota Team Le Mans | 1:25.3770 |
| 4th | 64 | Tsugio Matsuda / Dominik Schwager | Honda NSX (GH-NA2) | Mobil1 Nakajima Racing | 1:25.4400 |
| 5th | 38 | Hironori Takeuchi / Yuuji Tachikawa | Toyota Supra (JZA80) | Toyota Team Cerumo | 1:25.4660 |
| 6th | 36 | Takuya Kurosawa / Takeshi Tsuchiya | Toyota Supra (JZA80) | Toyota Team Tom's | 1:25.4800 |
| 7th | 21 | Naoki Hattori / Yasushi Hitotsuyama | McLaren F1 GTR | Hitotsuyama Racing | 1:25.4900 |
| 8th | 22 | Michael Krumm / Tetsuya Tanaka | Nissan Skyline GT-R (BNR34) | NISMO | 1:25.5160 |
| 9th | 12 | Kazuyoshi Hoshino / Satoshi Motoyama | Nissan Skyline GT-R (BNR34) | Team Impul | 1:25.5700 |
| 10th | 18 | Hiroki Katou / Sébastien Philippe | Honda NSX (GH-NA2) | Dome Mugen Project | 1:25.7550 |
| 11th | 39 | Jeremie Dufour / Romain Dumas | Toyota Supra (JZA80) | Toyota Team SARD | 1:25.7740 |
| 12th | 1 | Ryou Michigami / Hidetoshi Mitsusada | Honda NSX (GH-NA2) | Dome Mugen Project | 1:25.9980 |
| 13th | 37 | Shin'ichi Yamaji / Wayne Gardner | Toyota Supra (JZA80) | Toyota Team Tom's | 1:26.0280 |
| 14th | 100 | Akira Iida / Daisuke Itou | Honda NSX (GH-NA2) | Team Kunimitsu With Mooncraft | 1:26.1840 |
| 15th | 30 | Hideki Okada / André Couto | McLaren F1 GTR | Team Take One | 1:26.2960 |
| 16th | 8 | Keiichi Tsuchiya / Katsutomo Kaneishi | Honda NSX (GH-NA2) | Autobacs Racing Team Aguri | 1:26.5640 |
| 17th | 88 | Naohiro Furuya / Marco Apicella | Lamborghini Diablo (DE21) | JLOC | 1:30.3400 |
| 19th | 81 | Nobuyuki Ohyagi / Takayuki Aoki | Nissan Silvia (S15) | Team Daishin | 1:33.8210 |
| 20th | 3 | Yuuji Ide / Masataka Yanagida | Nissan Silvia (S15) | Hasemi Motorsports | 1:34.5580 |
| 21st | 19 | Minoru Tanaka / Satoru Gotou | Toyota MR-S (GH-ZZW30) | Racing Project Bandoh | 1:34.7130 |
| 22nd | 7 | Haruhiko Matsumoto / Tetsuya Yamano | Mazda RX-7 (FD3S) | RE Amemiya Racing | 1:34.9790 |
| 23rd | 0 | Masahiro Matsunaga / Kumi Satou | Toyota MR-S (GH-ZZW30) | Tom's Spilit | 1:35.0870 |
| 24th | 77 | Katsuo Kobayashi / Tatsuya Tanigawa | Subaru Impreza (E-GC8) | Cusco Racing | 1:35.1120 |
| 25th | 71 | Masaki Jounai / Eiichi Tajima | Toyota MR-S (GH-ZZW30) | Sigmatech Racing Team | 1:35.3030 |
| 26th | 63 | "Osamu" / Takamasa Nakagawa | Porsche 996 GT3-RS | R&D SPORT | 1:35.3480 |
| 27th | 31 | Morio Nitta / Shinichi Takagi | Toyota MR-S (GH-ZZW30) | ARTA With A'pex | 1:35.3500 |
| 28th | 9 | Akira Watanabe / Tsunefumi Hioki | Porsche 996 GT3-R | Team Daikokuya | 1:35.7300 |
| 29th | 360 | Kota Sasaki / Seigou Nishizawa | Ferrari 360 Modena (GFF360) | Dentaire Projet | 1:35.7680 |
| 30th | 51 | Naofumi Omoto / Yasukichi Yamamoto | Nissan Silvia (S15) | Auto Staff Racing Team | 1:35.8410 |
| 31st | 26 | Hideo Fukuyama / Atsushi Yogou | Porsche 996 GT3-RS | Team Taisan Advan | 1:35.9180 |
| 32nd | 11 | Jun'ichi Ikura / Yuusei Maki | Porsche 996 GT3-R | Team Gainer | 1:35.9360 |
| 33rd | 24 | Hideshi Matsuda / Kazuyuki Nishizawa | Porsche 996 GT3-R | Team Taisan Advan | 1:35.9800 |
| 34th | 55 | Eiji Yamada / Takayuki Kinoshita | Chrysler Viper GTS-R | Team Taisan Advan Jr. | 1:36.1160 |
| 35th | 910 | Hisashi Wada / Tomohiko Sunako | Porsche 996 GT3-RS | 910 Racing | 1:36.3220 |
| 36th | 62 | Shinsuke Shibahara / Shogo Mitsuyama | Porsche 996 GT3-R | R&D Sport | 1:36.9680 |
| 37th | 70 | Yoshimi Ishibashi / Hiroaki Suga | Porsche 996 GT3-RS | Team Gaikokuya | 1:37.3110 |
| 38th | 10 | Yutaka Yamagishi / Takahisa Oono | Porsche 993 RSR | Ability Motorsport | 1:38.2940 |
| 39th | 900 | Dilantha Malagamuwa / Tetsuya Nakajima | Mosler MT900R | Team Sri Lanka | 1:39.0500 |
| 40th | 911 | Masamitsu Ishihara / Akira Hirakawa | Porsche 996 GT3-RS | 910 Racing | 1:52.5300 |