| 1st | 1 | Timo Bernhard / Mark Webber / Brendon Hartley | Porsche 919 Hybrid | Porsche Team | 3:23.3070 |
| 2nd | 5 | Anthony Davidson / Sébastien Buemi / Kazuki Nakajima | Toyota TS050 Hybrid | Toyota Gazoo Racing | 3:24.3990 |
| 3rd | 2 | Romain Dumas / Neel Jani / Marc Lieb | Porsche 919 Hybrid | Porsche Team | 3:25.5110 |
| 4th | 6 | Stéphane Sarrazin / Mike Conway / Kamui Kobayashi | Toyota TS050 Hybrid | Toyota Gazoo Racing | 3:25.8990 |
| 5th | 8 | Lucas di Grassi / Loïc Duval / Oliver Jarvis | Audi R18 | Audi Sport Team Joest | 3:26.6800 |
| 6th | 12 | Nicolas Prost / Nick Heidfeld / Nelson Piquet, Jr. | Rebellion R-One AER | Rebellion Racing | 3:27.5730 |
| 7th | 13 | Mathéo Tuscher / Alexandre Imperatori / Dominik Kraihamer | Rebellion R-One AER | Rebellion Racing | 3:30.0100 |
| 8th | 4 | Pierre Kaffer / Simon Trummer / Oliver Webb | CLM P1/01 AER | Bykolles Racing Team | 3:34.1680 |
| 9th | 35 | David Cheng / Nelson Panciatici / Ho-Pin Tung | Alpine A460 Nissan | Baxi DC Racing Alpine | 3:39.5590 |
| 10th | 47 | Tsugio Matsuda / Matthew Howson / Richard Bradley | Oreca 05 Nissan | KCMG | 3:39.5620 |
| 11th | 31 | Ryan Dalziel / Pipo Derani / Chris Cumming | Ligier JS P2 Nissan | Extreme Speed Motorsports | 3:40.4360 |
| 12th | 46 | Pierre Thiriet / Mathias Beche / Ryō Hirakawa | Oreca 05 Nissan | Thiriet By Tds Racing | 3:40.6110 |
| 13th | 36 | Gustavo Menezes / Nicolas Lapierre / Stéphane Richelmi | Alpine A460 Nissan | Signatech Alpine | 3:40.8950 |
| 14th | 28 | Ines Taittinger / Remy Striebig / Leo Roussel | Morgan LM P2 Nissan | Pegasus Racing | 3:41.2850 |
| 15th | 27 | Nicolas Minassian / Mikhail Aleshin / Maurizio Mediani | BR 01 Nissan | SMP Racing | 3:41.4570 |
| 16th | 37 | Vitaly Petrov / Victor Shaytar / Kirill Ladygin | BR 01 Nissan | SMP Racing | 3:41.7760 |
| 17th | 25 | Michael Munemann / Andrea Pizzitola / Chris Hoy | Ligier JS P2 Nissan | Algarve Pro Racing | 3:42.0880 |
| 18th | 41 | Memo Rojas / Julien Canal / Nathanaël Berthon | Ligier JS P2 Nissan | Greaves Motorsport | 3:42.5700 |
| 19th | 42 | Nick Leventis / Danny Watts / Jonny Kane | Gibson 015S Nissan | Strakka Racing | 3:44.1420 |
| 20th | 43 | Ricardo Gonzalez / Bruno Senna / Filipe Albuquerque | Ligier JS P2 Nissan | RGR Sport By Morand | 3:44.1980 |
| 21st | 22 | Vincent Capillaire / Olivier Lombard / Jonathan Coleman | Ligier JS P2 Judd | SO24 ! By Lombard Racing | 3:44.3470 |
| 22nd | 23 | Fabien Barthez / Paul-Loup Chatin / Timothe Buret | Ligier JS P2 Nissan | Panis Barthez Competition | 3:45.0180 |
| 23rd | 48 | Ben Keating / Jeroen Bleekemolen / Marc Goossens | Oreca 03R Nissan | Murphy Prototypes | 3:45.0670 |
| 24th | 7 | Andre Lotterer / Marcel Fässler / Benoit Tréluyer | Audi R18 | Audi Sport Team Joest | 3:45.4680 |
| 25th | 34 | Niki Leutwiler / Shinji Nakano / James Winslow | Oreca 03R Judd | Race Performance | 3:45.7110 |
| 26th | 40 | Tracy Krohn / Niclas Jönsson / João Barbosa | Ligier JS P2 Nissan | Krohn Racing | 3:45.9780 |
| 27th | 49 | John Pew / Oswaldo Negri / Laurens Vanthoor | Ligier JS P2 Honda | Michael Shank Racing | 3:51.7590 |
| 28th | 51 | Gianmaria Bruni / James Calado / Alessandro Pier Guidi | Ferrari 488 GTE | AF Corse | 3:53.2180 |
| 29th | 69 | Ryan Briscoe / Richard Westbrook / Scott Dixon | Ford GT | Ford Chip Ganassi Team USA | 3:53.6030 |
| 30th | 68 | Joey Hand / Sébastien Bourdais / Dirk Müller | Ford GT | Ford Chip Ganassi Team USA | 3:53.6720 |
| 31st | 82 | Giancarlo Fisichella / Toni Vilander / Matteo Malucelli | Ferrari 488 GTE | Risi Competizione | 3:55.0320 |
| 32nd | 71 | Andrea Bertolini / Davide Rigon / Sam Bird | Ferrari 488 GTE | AF Corse | 3:55.0660 |
| 33rd | 67 | Marino Franchitti / Andy Priaulx / Harry Tincknell | Ford GT | Ford Chip Ganassi Team UK | 3:55.7500 |
| 34th | 91 | Patrick Pilet / Kevin Estre / Nick Tandy | Porsche 991 RSR (2016) | Porsche Motorsport | 3:56.7920 |
| 35th | 77 | Richard Lietz / Philipp Eng / Michael Christensen | Porsche 991 RSR (2016) | Dempsey - Proton Racing | 3:57.0820 |
| 36th | 92 | Frédéric Makowiecki / Earl Bamber / Jörg Bergmeister | Porsche 991 RSR (2016) | Porsche Motorsport | 3:57.1280 |
| 37th | 88 | Khaled Al Qubaisi / David Heinemeier Hansson / Patrick Long | Porsche 991 RSR | Abu Dhabi-Proton Racing | 3:57.5130 |
| 38th | 66 | Olivier Pla / Stefan Mücke / Billy Johnson | Ford GT | Ford Chip Ganassi Team UK | 3:58.3580 |
| 39th | 64 | Oliver Gavin / Tommy Milner / Jordan Taylor | Chevrolet Corvette C7.R | Corvette Racing - GM | 3:58.4930 |
| 40th | 78 | Christian Ried / Wolf Henzler / Joël Camathias | Porsche 991 RSR | KCMG | 3:59.0340 |
| 41st | 63 | Jan Magnussen / Antonio Garcia / Ricky Taylor | Chevrolet Corvette C7.R | Corvette Racing - GM | 3:59.2680 |
| 42nd | 55 | Duncan Cameron / Matt Griffin / Aaron Scott | Ferrari 458 Italia | AF Corse | 3:59.4690 |
| 43rd | 89 | Leh Keen / Marc Miller / *Cooper MacNeil | Porsche 991 RSR | Proton Competition | 4:00.1070 |
| 44th | 84 | Frédéric Sausset / Christophe Tinseau / Jean-Bernard Bouvet | Morgan LM P2 Nissan | SRT41 By OAK Racing | 4:01.6070 |
| 45th | 38 | Simon Dolan / Giedo Van Der Garde / Jake Dennis | Gibson 015S Nissan | G-Drive Racing | 4:01.9810 |
| 46th | 83 | François Perrodo / Emmanuel Collard / Rui Aguas | Ferrari 458 Italia | AF Corse | 4:03.6760 |
| 47th | 60 | Johnny Laursen / Mikkel Mac Jensen / Christina Nielsen | Ferrari 458 Italia | Formula Racing | 4:03.8510 |
| 48th | 26 | Roman Rusinov / Will Stevens / René Rast | Oreca 05 Nissan | G-Drive Racing | 4:04.8870 |
| 49th | 62 | Bill Sweedler / Townsend Bell / Jeff Segal | Ferrari 458 Italia | Scuderia Corsa | 4:05.6430 |
| 50th | 57 | Johnny O'Connell / Oliver Bryant / Mark Patterson | Chevrolet Corvette C7-Z06 | Team AAI | 4:05.8220 |
| 51st | 61 | Weng Sun Mok / Keita Sawa / Rob Bell | Ferrari 458 Italia | Clearwater Racing | 4:06.8010 |
| 52nd | 86 | Mike Wainwright / Adam Carroll / Ben Barker | Porsche 991 RSR | Gulf Racing | 4:09.2830 |
| 53rd | 44 | Tor Graves / Matthew Rao / Roberto Merhi | Oreca 05 Nissan | Manor | 4:11.6860 |
| 54th | 30 | Scott Sharp / Ed Brown / Johannes Van Overbeek | Ligier JS P2 Nissan | Extreme Speed Motorsports | 4:14.4560 |
| 55th | 33 | Tristan Gommendy / Pu Jun Jin / Nico Pieter de Bruijn | Oreca 05 Nissan | Eurasia Motorsport | 4:14.4910 |
| 56th | 50 | Yutaka Yamagishi / Pierre Ragues / Paolo Ruberti | Chevrolet Corvette C7-Z06 | Larbre Competition | 4:27.5300 |
| 57th | 95 | Marco Sørensen / Nicki Thiim / Darren Turner | Aston Martin V8 Vantage GTE | Aston Martin Racing | 4:34.2980 |
| 58th | 97 | Ritchie Stanaway / Fernando Rees / Jonathan Adam | Aston Martin V8 Vantage GTE | Aston Martin Racing | 4:40.1660 |
| 59th | 98 | Paul Dalla Lana / Pedro Lamy / Mathias Lauda | Aston Martin V8 Vantage GTE | Aston Martin Racing | 4:44.6510 |
| 60th | 99 | Andrew Howard / Liam Griffin / Gary Hirsch | Aston Martin V8 Vantage GTE | Aston Martin Racing | 5:12.7880 |