| 1st | 8 | Lucas di Grassi / Loïc Duval / Oliver Jarvis | Audi R18 | Audi Sport Team Joest | 1:24.8380 |
| 2nd | 2 | Romain Dumas / Neel Jani / Marc Lieb | Porsche 919 Hybrid | Porsche Team | 1:25.1780 |
| 3rd | 1 | Timo Bernhard / Mark Webber / Brendon Hartley | Porsche 919 Hybrid | Porsche Team | 1:25.4170 |
| 4th | 5 | Sébastien Buemi / Kazuki Nakajima | Toyota TS050 Hybrid | Toyota Gazoo Racing | 1:25.8910 |
| 5th | 7 | Andre Lotterer / Marcel Fässler | Audi R18 | Audi Sport Team Joest | 1:25.9380 |
| 6th | 6T | Stéphane Sarrazin / Mike Conway / Kamui Kobayashi | Toyota TS050 Hybrid | Toyota Gazoo Racing | 1:26.1490 |
| 7th | 13 | Mathéo Tuscher / Dominik Kraihamer / Alexandre Imperatori | Rebellion R-One AER | Rebellion Racing | 1:29.9420 |
| 8th | 4 | Pierre Kaffer / Simon Trummer / Oliver Webb | CLM P1/01 AER | Bykolles Racing Team | 1:32.4580 |
| 9th | 26 | Roman Rusinov / René Rast / Alex Brundle | Oreca 05 Nissan | G-Drive Racing | 1:35.4560 |
| 10th | 42 | Nick Leventis / Lewis Williamson / Jonny Kane | Gibson 015S Nissan | Strakka Racing | 1:35.7530 |
| 11th | 36 | Gustavo Menezes / Nicolas Lapierre / Stéphane Richelmi | Alpine A460 Nissan | Signatech Alpine | 1:35.9550 |
| 12th | 43 | Ricardo Gonzalez / Filipe Albuquerque / Bruno Senna | Ligier JS P2 Nissan | RGR Sport by Morand | 1:36.2830 |
| 13th | 35 | David Cheng / Nelson Panciatici / Ho-Pin Tung | Alpine A460 Nissan | Baxi DC Racing Alpine | 1:36.4880 |
| 14th | 27 | Nicolas Minassian / Maurizio Mediani | BR01 Nissan | SMP Racing | 1:36.9740 |
| 15th | 44 | Matthew Rao / Richard Bradley / Alfonso Diaz Guerra | Oreca 05 Nissan | Manor | 1:37.1000 |
| 16th | 37 | Vitaly Petrov / Kirill Ladygin / Victor Shaytar | BR01 Nissan | SMP Racing | 1:37.2430 |
| 17th | 31 | Ryan Dalziel / Pipo Derani / Chris Cumming | Ligier JS P2 Nissan | Extreme Speed Motorsports | 1:37.4770 |
| 18th | 41 | Roberto Gonzalez / Bruno Junqueira / Luis Diaz | Gibson 015S Nissan | Greaves Motorsport | 1:37.6630 |
| 19th | 95 | Marco Sørensen / Nicki Thiim | Aston Martin V8 Vantage GTE | Aston Martin Racing | 1:40.7080 |
| 20th | 51 | Gianmaria Bruni / James Calado | Ferrari 488 GTE | AF Corse | 1:40.9340 |
| 21st | 97 | Ritchie Stanaway / Darren Turner | Aston Martin V8 Vantage GTE | Aston Martin Racing | 1:41.0670 |
| 22nd | 66 | Stefan Mücke / Olivier Pla | Ford GT | Ford Chip Ganassi Team UK | 1:41.3470 |
| 23rd | 77 | Richard Lietz / Michael Christensen | Porsche 991 RSR (2016) | Dempsey - Proton Racing | 1:41.4800 |
| 24th | 30 | Scott Sharp / Ed Brown / Johannes Van Overbeek | Ligier JS P2 Nissan | Extreme Speed Motorsports | 1:41.5300 |
| 25th | 71 | Davide Rigon / Sam Bird | Ferrari 488 GTE | AF Corse | 1:41.5540 |
| 26th | 67 | Marino Franchitti / Andy Priaulx / Harry Tincknell | Ford GT | Ford Chip Ganassi Team UK | 1:42.2570 |
| 27th | 98 | Paul Dalla Lana / Pedro Lamy / Mathias Lauda | Aston Martin V8 Vantage GTE | Aston Martin Racing | 1:42.8650 |
| 28th | 88 | Khaled Al Qubaisi / David Heinemeier Hansson / Patrick Long | Porsche 991 RSR | Abu Dhabi-Proton Racing | 1:43.5370 |
| 29th | 78 | Christian Ried / Wolf Henzler / Joël Camathias | Porsche 991 RSR | KCMG | 1:43.8560 |
| 30th | 50 | Yutaka Yamagishi / Pierre Ragues / Ricky Taylor | Chevrolet Corvette C7-Z06 | Larbre Competition | 1:44.4930 |
| 31st | 83 | François Perrodo / Emmanuel Collard / Rui Aguas | Ferrari 458 Italia | AF Corse | 1:44.5080 |
| 32nd | 86 | Mike Wainwright / Adam Carroll / Ben Barker | Porsche 991 RSR | Gulf Racing | 1:44.8500 |