| 6 | Kazuya Oshima / Yuuji Kunimoto | Lexus RC F | Lexus Team Le Mans Eneos | 1:19.4040 |
| 12 | Hironobu Yasuda / Joao Paolo de Oliveira | Nissan GT-R (R35) | Team Impul | 1:19.4740 |
| 46 | Satoshi Motoyama / Masataka Yanagida | Nissan GT-R (R35) | Mola | 1:19.5740 |
| 36 | Kazuki Nakajima / James Rossiter | Lexus RC F | Lexus Team Petronas Tom's | 1:19.7770 |
| 37 | Daisuke Itou / Andrea Caldarelli | Lexus RC F | Lexus Team KeePer Tom's | 1:19.8040 |
| 23 | Tsugio Matsuda / Ronnie Quintarelli | Nissan GT-R (R35) | NISMO | 1:19.9060 |
| 17 | Koudai Tsukakoshi / Toshihiro Kaneishi | Honda NSX Concept-GT (NSX-P) | Keihin Real Racing | 1:20.1760 |
| 18 | Naoki Yamamoto / Jean-Karl Vernay | Honda NSX Concept-GT (NSX-P) | weider Modulo Dome Racing | 1:21.0110 |
| 31 | Morio Nitta / Kouki Saga | Toyota Prius (ZVW30) | Apr | 1:26.7740 |
| 4 | Nobuteru Taniguchi / Tatsuya Kataoka | BMW Z4 GT3 (E89) | GSR & Studie With Team Ukyo | 1:26.8690 |
| 55 | Shinichi Takagi / Takashi Kobayashi | Honda CR-Z (ZF2) | Autobacs Racing Team Aguri | 1:27.0340 |
| 7 | Seiji Ara / Jörg Müller | BMW Z4 GT3 (E89) | BMW Sports Trophy Team Studie | 1:27.1260 |
| 0 | Yuuki Nakayama / Tomoki Nojiri | Honda CR-Z (ZF2) | Team Mugen | 1:27.3670 |
| 11 | Katsuyuki Hiranaka / Björn Wirdheim | Mercedes-Benz SLS AMG GT3 | Gainer | 1:27.4500 |
| 3 | Kazuki Hoshino / Lucas Ordoñez | Nissan GT-R Nismo GT3 (R35) | NDDP Racing | 1:27.6420 |
| 88 | Manabu Orido / Takayuki Aoki | Lamborghini Gallardo GT3 (22-12226) | JLOC | 1:27.7090 |
| 65 | Haruki Kurosawa / Kyousuke Mineo | Mercedes-Benz SLS AMG GT3 | Leon Racing | 1:27.7880 |
| 60 | Akira Iida / Hiroki Yoshimoto | BMW Z4 GT3 (E89) | LM Corsa | 1:27.8200 |
| 2 | Kazuho Takahashi / Hiroki Katou | McLaren MP4-12C GT3 | Cars Tokai Dream28 | 1:29.0420 |
| 61 | Kota Sasaki / Takuto Iguchi | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 1:30.0540 |
| 360 | Atsushi Tanaka / Hiroki Yoshida | Nissan GT-R Nismo GT3 (R35) | Tomei Sports | 1:30.3280 |