| 1 | Timo Bernhard / Mark Webber / Brendon Hartley | Porsche 919 Hybrid | Porsche Team | 1:37.4450 |
| 5 | Stéphane Sarrazin / Mike Conway / Kamui Kobayashi | Toyota TS050 Hybrid | Toyota Gazoo Racing | 1:38.2730 |
| 7 | Andre Lotterer / Marcel Fässler / Benoit Tréluyer | Audi R18 | Audi Sport Team Joest | 1:38.8270 |
| 13 | Mathéo Tuscher / Dominik Kraihamer / Alexandre Imperatori | Rebellion R-One AER | Rebellion Racing | 1:41.7330 |
| 12 | Nicolas Prost / Nelson Piquet, Jr. / Nick Heidfeld | Rebellion R-One AER | Rebellion Racing | 1:42.7060 |
| 4 | Oliver Webb | CLM P1/01 AER | Bykolles Racing Team | 1:43.6260 |
| 36 | Gustavo Menezes / Nicolas Lapierre / Stéphane Richelmi | Alpine A460 Nissan | Signatech Alpine | 1:46.9740 |
| 26 | Roman Rusinov / Nathanaël Berthon / René Rast | Oreca 05 Nissan | G-Drive Racing | 1:47.0240 |
| 44 | Tor Grayes / Matthew Rao / Will Stevens / James Jakes | Oreca 05 Nissan | Manor | 1:47.6960 |
| 35 | David Cheng / Nelson Panciatici / Ho-Pin Tung | Alpine A460 Nissan | Baxi DC Racing Alpine | 1:47.7040 |
| 37 | Vitaly Petrov / Kirill Ladygin / Victor Shaytar | BR01 Nissan | SMP Racing | 1:48.1380 |
| 42 | Nick Leventis / Danny Watts / Jonny Kane | Gibson 015S Nissan | Strakka Racing | 1:48.3090 |
| 30 | Ed Brown / Johannes Van Overbeek | Ligier JS P2 Nissan | Extreme Speed Motorsports | 1:48.6190 |
| 27 | Nicolas Minassian / Devi Markozov / Maurizio Mediani | BR01 Nissan | SMP Racing | 1:48.6920 |
| 31 | Ryan Dalziel / Chris Cumming | Ligier JS P2 Nissan | Extreme Speed Motorsports | 1:48.9530 |
| 43 | Ricardo Gonzalez / Filipe Albuquerque / Bruno Senna | Ligier JS P2 Nissan | RGR Sport by Morand | 1:49.1920 |
| 71 | Davide Rigon / Sam Bird | Ferrari 488 GTE | AF Corse | 1:58.0830 |
| 51 | Gianmaria Bruni / James Calado | Ferrari 488 GTE | AF Corse | 1:58.3620 |
| 67 | Marino Franchitti / Andy Priaulx / Harry Tincknell | Ford GT | Ford Chip Ganassi Team UK | 1:58.7860 |
| 86 | Mike Wainwright / Adam Carroll / Ben Barker | Porsche 991 RSR | Gulf Racing | 1:58.8180 |
| 66 | Billy Johnson / Stefan Mücke / Olivier Pla | Ford GT | Ford Chip Ganassi Team UK | 1:58.9220 |
| 83 | François Perrodo / Emmanuel Collard / Rui Aguas | Ferrari 458 Italia | AF Corse | 1:59.1450 |
| 97 | Ritchie Stanaway / Fernando Rees / Jonathan Adam | Aston Martin V8 Vantage GTE | Aston Martin Racing | 2:00.2980 |
| 78 | Christian Ried / Joël Camathias | Porsche 991 RSR | KCMG | 2:00.3730 |
| 88 | Khaled Al Qubaisi | Porsche 991 RSR | Abu Dhabi-Proton Racing | 2:00.5030 |
| 98 | Paul Dalla Lana / Pedro Lamy | Aston Martin V8 Vantage GTE | Aston Martin Racing | 2:01.5080 |
| 77 | Christian Ried | Porsche 991 RSR (2016) | Dempsey - Proton Racing | 2:04.3050 |