| 1st | 38 | Hironori Takeuchi / Yuuji Tachikawa | Toyota Supra (JZA80) | Toyota Team Cerumo | 1:59.1840 |
| 2nd | 22 | Michael Krumm / Tetsuya Tanaka | Nissan Skyline GT-R (BNR34) | NISMO | 1:59.5740 |
| 3rd | 6 | Juichi Wakisaka / Hideki Noda | Toyota Supra (JZA80) | Esso Toyota Team Le Mans | 1:59.7090 |
| 4th | 18 | Hiroki Katou / Sébastien Philippe | Honda NSX (GH-NA2) | Dome Mugen Project | 1:59.8750 |
| 5th | 64 | Tsugio Matsuda / Dominik Schwager | Honda NSX (GH-NA2) | Mobil1 Nakajima Racing | 1:59.9540 |
| 6th | 36 | Wayne Gardner / Takeshi Tsuchiya | Toyota Supra (JZA80) | Toyota Team Tom's | 2:00.1280 |
| 7th | 100 | Akira Iida / Daisuke Itou | Honda NSX (GH-NA2) | Team Kunimitsu With Mooncraft | 2:00.3830 |
| 8th | 33 | Ukyou Katayama / Masahiko Kondou | Toyota Supra (JZA80) | Toyota Team Cerumo With Cerumo | 2:00.7500 |
| 9th | 8 | Keiichi Tsuchiya / Katsutomo Kaneishi | Honda NSX (GH-NA2) | Autobacs Racing Team Aguri | 2:00.8890 |
| 10th | 21 | Yasushi Hitotsuyama / Naoki Hattori | McLaren F1 GTR (4S70) | Hitotsuyama Racing | 2:01.0180 |
| 11th | 1 | Ryou Michigami / Hidetoshi Mitsusada | Honda NSX (GH-NA2) | Dome Mugen Project | 2:01.0370 |
| 12th | 23 | Erik Comas / Masami Kageyama | Nissan Skyline GT-R (BNR34) | NISMO | 2:01.7440 |
| 13th | 12 | Kazuyoshi Hoshino / Satoshi Motoyama | Nissan Skyline GT-R (BNR34) | Team Impul | 2:03.2700 |
| 14th | 3 | Yuuji Ide / Masataka Yanagida | Nissan Silvia (S15) | Hasemi Motorsports | 2:11.3170 |
| 15th | 77 | Katsuo Kobayashi / Tatsuya Tanigawa | Subaru Impreza (E-GC8) | Cusco Racing | 2:11.7950 |
| 16th | 31 | Morio Nitta / Shinichi Takagi | Toyota MR-S (GH-ZZW30) | ARTA With A'pex | 2:11.8670 |
| 17th | 360 | Kota Sasaki / Seigou Nishizawa | Ferrari 360 Modena (GFF360) | Dentaire Projet | 2:13.0710 |
| 18th | 24 | Hideshi Matsuda / Kazuyuki Nishizawa | Porsche 996 GT3-R | Team Taisan Advan | 2:13.1530 |
| 19th | 26 | Hideo Fukuyama / Atsushi Yogou | Porsche 996 GT3-RS | Team Taisan Advan | 2:13.7610 |
| 20th | 55 | Eiji Yamada / Takayuki Kinoshita | Chrysler Viper GTS-R | Team Taisan Advan Jr. | 2:13.9190 |
| 21st | 910 | Hisashi Wada / Adam Wilcox | Porsche 996 GT3-RS | 910 Racing | 2:14.3530 |
| 22nd | 9 | Yukihiro Hane / Yousuke Shimojima | Porsche 996 GT3-R | Team Daikokuya | 2:14.6020 |
| 23rd | 62 | Shinsuke Shibahara / Shogo Mitsuyama | Porsche 996 GT3-R | R&D Sport | 2:15.1390 |
| 24th | 70 | Yoshimi Ishibashi / Hiroaki Suga | Porsche 996 GT3-RS | Team Gaikokuya | 2:16.4340 |
| 25th | 5 | Key Soon Yue / Ila Ridak | Porsche 993 RS | Competizione Sdn Bhd | 2:37.7380 |