| 18 | Takashi Kogure / Carlo van Dam | Honda HSV-010 GT (H010) | Weider Honda Racing | 1:55.3210 |
| 38 | Yuuji Tachikawa / Kouhei Hirate | Lexus SC430 (UZZ40) | Lexus Team Zent Cerumo | 1:55.5030 |
| 23 | Satoshi Motoyama / Michael Krumm | Nissan GT-R (R35) | Nismo | 1:55.6650 |
| 12 | Tsugio Matsuda / Joao Paolo de Oliveira | Nissan GT-R (R35) | Team Impul | 1:55.7020 |
| 36 | Loic Duval / Kazuki Nakajima | Lexus SC430 (UZZ40) | Lexus Team Petronas Tom's | 1:56.1450 |
| 24 | Hironobu Yasuda / Björn Wirdheim | Nissan GT-R (R35) | Kondo Racing | 1:56.4050 |
| 100 | Takuya Izawa / Naoki Yamamoto | Honda HSV-010 GT (H010) | Team Kunimitsu | 1:56.5980 |
| 35 | Yuuji Kunimoto / Andrea Caldarelli | Lexus SC430 (UZZ40) | Lexus Team KeePer Kraft | 1:57.3800 |
| 19 | Seiji Ara / André Couto | Lexus SC430 (UZZ40) | Lexus Team WedsSport Bandoh | 1:57.8550 |
| 39 | Juichi Wakisaka / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Lexus Team Sard | 1:59.1750 |
| 33 | Masami Kageyama / Tomonobu Fujii | Porsche 997 GT3 R | Hankook KTR | 2:04.2620 |
| 87 | Kouji Yamanishi / Hideki Yamauchi | Lamborghini Gallardo LP600+ GT3 (09-7) | JLOC | 2:05.3710 |
| 911 | Kyousuke Mineo / Naoki Yokomizo | Porsche 997 GT3 R | Team Taisan Endless | 2:05.3950 |
| 88 | Manabu Orido / Takayuki Aoki | Lamborghini Gallardo LP600+ GT3 (09-7) | JLOC | 2:05.8510 |
| 52 | Hironori Takeuchi / Haruki Kurosawa | Mercedes-Benz SLS AMG GT3 | Green Tec & Leon With Shift | 2:05.8820 |
| 3 | Yuuhi Sekiguchi / Katsumasa Chiyo | Nissan GT-R Nismo GT3 (R35) | NDDP Racing | 2:06.7950 |
| 0 | Nobuteru Taniguchi / Tatsuya Kataoka | BMW Z4 GT3 (E89) | GSR & Studie With Team Ukyo | 2:06.8330 |
| 31 | Morio Nitta / Kouki Saga | Toyota Prius (ZVW30) | Apr | 2:06.8690 |
| 4 | Taku Bamba / Masahiro Sasaki | BMW Z4 GT3 (E89) | GSR & Studie With Team Ukyo | 2:08.0440 |
| 2 | Kazuho Takahashi / Hiroki Katou | Shiden MC/RT-16 | Cars Tokai Dream28 | 2:08.0800 |