| 1st | 25 | Seiji Ara / Jeremie Dufour | Toyota Supra (JZA80) | Team Advan Tsuchiya | 1:55.7450 |
| 2nd | 22 | Masami Kageyama / Richard Lyons | Nissan Skyline GT-R (BNR34) | NISMO | 1:55.8990 |
| 3rd | 12 | Benoit Tréluyer / Yuuji Ide | Nissan Skyline GT-R (BNR34) | Team Impul | 1:56.0370 |
| 4th | 38 | Hironori Takeuchi / Yuuji Tachikawa | Toyota Supra (JZA80) | Toyota Team Cerumo | 1:56.2430 |
| 5th | 18 | Ryou Michigami / Sébastien Philippe | Honda NSX (LA-NA2) | Dome Racing Team | 1:56.2760 |
| 6th | 1 | Juichi Wakisaka / Akira Iida | Toyota Supra (JZA80) | Esso Toyota Team Le Mans | 1:56.3040 |
| 7th | 39 | Dominik Schwager / Manabu Orido | Toyota Supra (JZA80) | Toyota Team SARD | 1:56.6960 |
| 8th | 23 | Satoshi Motoyama / Michael Krumm | Nissan Skyline GT-R (BNR34) | NISMO | 1:56.7170 |
| 9th | 16 | Daisuke Itou / Tom Coronel | Honda NSX (LA-NA2) | Dome Racing Team | 1:56.7180 |
| 10th | 100 | Hiroki Katou / Hidetoshi Mitsusada | Honda NSX (LA-NA2) | Team Kunimitsu With Mooncraft | 1:56.8410 |
| 11th | 35 | Naoki Hattori / Shigekazu Wakisaka | Toyota Supra (JZA80) | KRAFT | 1:57.8130 |
| 12th | 64 | Tsugio Matsuda / Andre Lotterer | Honda NSX (LA-NA2) | Mobil1 Nakajima Racing | 1:58.6250 |
| 13th | 8 | Keiichi Tsuchiya / Toshihiro Kaneishi | Honda NSX (LA-NA2) | Autobacs Racing Team Aguri | 1:58.6670 |
| 14th | 62 | Shinsuke Shibahara / Shogo Mitsuyama | Vemac RD350R | R&D Sports | 1:59.3850 |
| 15th | 36 | Takeshi Tsuchiya / Erik Comas | Toyota Supra (JZA80) | Toyota Team Tom's | 1:59.6330 |
| 16th | 37 | Takuya Kurosawa / Marco Apicella | Toyota Supra (JZA80) | Toyota Team Tom's | 2:00.5810 |
| 17th | 88 | Kouji Yamanishi / Hisashi Wada | Lamborghini Diablo (ZA90DE068) | JLOC | 2:04.0160 |
| 18th | 19 | Takayuki Aoki / Minoru Tanaka | Toyota Celica (ZZT231) | Racing Project Bandoh | 2:05.6150 |
| 19th | 11 | Hideshi Matsuda / Tetsuya Tanaka | Ferrari 360 Modena (GF-F360) | Team Gainer | 2:05.8160 |
| 20th | 3 | Mitsuhiro Kinoshita / Masataka Yanagida | Nissan Fairlady Z (Z33) | Hasemi Motorsports | 2:06.2250 |
| 21st | 43 | Morio Nitta / Shinichi Takagi | ASL Garaiya | Autobacs Racing Team Aguri | 2:06.6650 |
| 22nd | 55 | Eiji Yamada / Takayuki Kinoshita | Chrysler Viper GTS-R | Team Taisan Advan | 2:06.6670 |
| 23rd | 17 | Masahiro Matsunaga / Masaoki Nagashima | Toyota Celica (ZZT231) | Tom's Spirit | 2:07.0410 |
| 24th | 7 | Takashi Ooi / Haruhiko Matsumoto | Mazda RX-7 (FD3S) | RE Amemiya Racing | 2:07.9670 |
| 25th | 26 | Shin'ichi Yamaji / Kazuyuki Nishizawa | Porsche 996 GT3-R | Team Taisan Advan | 2:08.0560 |
| 26th | 2 | Kazuho Takahashi / Akira Watanabe | Honda NSX (GH-NA2) | Verno Tokai Dream 28 | 2:08.2000 |
| 27th | 5 | Tetsuji Tamanaka / Yasutaka Hinoi | Vemac RD320R | Team B-1 | 2:08.2680 |
| 28th | 31 | Kota Sasaki / Satoru Gotou | Toyota MR-S (GH-ZZW30) | Team Reckless | 2:08.4150 |
| 29th | 24 | Atsushi Yogou / Akihiko Asai | Porsche 996 GT3-R | Team Taisan Jr. | 2:08.4670 |
| 30th | 71 | Keita Sawa / Haruki Kurosawa | Toyota Celica (ZZT231) | Sigmatech Racing Team | 2:08.5110 |
| 31st | 81 | Kazuki Hoshino / Tadao Uematsu | Nissan Silvia (S15) | Team Daishin | 2:08.6760 |
| 32nd | 9 | Ichijou Suga / Katsuhiko Tsutsui | Mosler MT900R | A&S Racing | 2:08.7240 |
| 33rd | 911 | Kazuyoshi Takamizawa / Tomohiko Sunako | Porsche 996 GT3-R | 910 Racing | 2:09.1810 |
| 34th | 69 | Masaru Yamagishi / Kei Itaka | Porsche 996 GT3-R | Team Gaikokuya | 2:09.6610 |
| 35th | 77 | Katsuo Kobayashi / Tatsuya Tanigawa | Subaru Impreza (GDB) | Cusco Racing | 2:09.7080 |
| 36th | 910 | Akira Hirakawa / Yasuo Miyagawa | Porsche 996 GT3-R | 910 Racing | 2:09.7540 |
| 37th | 34 | Seigou Nishizawa / Kouji Matsuda | Toyota MR-S (GH-ZZW30) | Dentaire Projet Racing With Apr | 2:10.1040 |
| 38th | 15 | Genji Hashimoto / Tetsuya Yamano | BMW M3 GT (E46) | Amprex Motorsport | 2:10.7070 |
| 39th | 111 | Hiroya Iijima / Shigemitsu Haga | Porsche 996 GT3-R | Arktech Motorsports | 2:11.8430 |
| 40th | 63 | "Osamu" / Takamasa Nakagawa | Vemac RD320R | Team LeyJun | 2:12.1320 |
| 41st | 70 | Yoshimi Ishibashi / Hiroshi Wada | Porsche 996 GT3-R | Team Gaikokuya | 2:12.7940 |
| 42nd | 76 | Gou Shimizu / Eiichi Tajima | McLaren F1 GTR (4S70) | Hitotsuyama Racing | 2:12.9110 |
| 43rd | 51 | Naofumi Omoto / Masanobu Katou | Nissan Silvia (S15) | Auto Staff Racing Team | 3:34.3640 |