| 15 | Hideki Mutou / Oliver Turvey | Honda NSX Concept-GT (NSX-P) | Drago Modulo Honda Racing | 1:47.4560 |
| 46 | Satoshi Motoyama / Mitsunori Takaboshi | Nissan GT-R Nismo GT500 (R35) | Mola | 1:47.5870 |
| 12 | Hironobu Yasuda / Joao Paolo de Oliveira | Nissan GT-R Nismo GT500 (R35) | Team Impul | 1:47.9220 |
| 19 | Yuuhi Sekiguchi / Yuuji Kunimoto | Lexus RC F (USC10) | Lexus Team WedsSport Bandoh | 1:48.1140 |
| 8 | Kousuke Matsuura / Tomoki Nojiri | Honda NSX Concept-GT (NSX-P) | Autobacs Racing Team Aguri | 1:48.1910 |
| 17 | Koudai Tsukakoshi / Takashi Kogure | Honda NSX Concept-GT (NSX-P) | Keihin Real Racing | 1:48.5340 |
| 24 | Daiki Sasaki / Masataka Yanagida | Nissan GT-R Nismo GT500 (R35) | Kondo Racing | 1:48.6960 |
| 38 | Yuuji Tachikawa / Hiroaki Ishiura | Lexus RC F (USC10) | Lexus Team Zent Cerumo | 1:49.3270 |
| 18 | Yuuki Nakayama / Shin'nosuke Yamada | Toyota 86 MC (86/ZN6) | Team Upgarage With Bandoh | 1:57.8760 |
| 31 | Kouki Saga / Yuichi Nakayama | Toyota Prius (ZVW50) | Apr | 1:58.0920 |
| 2 | Kazuho Takahashi / Hiroki Katou / Tadasuke Makino | Lotus Evora MC (122) | Cars Tokai Dream28 | 1:58.1270 |
| 61 | Takuto Iguchi / Hideki Yamauchi | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 1:58.3480 |
| 25 | Takeshi Tsuchiya / Takamitsu Matsui / Kenta Yamashita | Toyota 86 MC (MC86) | Vivac Team Tsuchiya | 1:58.6080 |
| 0 | André Couto / Ryuichiro Tomita | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:58.9470 |
| 4 | Nobuteru Taniguchi / Tatsuya Kataoka | Mercedes-AMG GT3 | Goodsmile Racing & Team Ukyo | 1:58.9810 |
| 33 | Naoya Yamano / Yuuya Sakamoto | Porsche 991 GT3 R | Excellence Porsche Team KTR | 1:59.2300 |
| 65 | Haruki Kurosawa / Naoya Gamou | Mercedes-AMG GT3 (197) | K2 R&D Leon Racing | 1:59.4840 |
| 63 | Adrian Zaugg / Naoki Yokomizo | Lamborghini Huracán GT3 | Lamboghini Team Direction | 1:59.7280 |
| 3 | Kazuki Hoshino / Jann Mardenborough | Nissan GT-R Nismo GT3 (R35) | NDDP Racing | 1:59.9040 |
| 21 | Richard Lyons / Tomonobu Fujii | Audi R8 LMS | Audi Team Hitotsuyama | 2:00.0200 |
| 26 | Shogo Mitsuyama / Yuya Motojima / Shinji Nakano | Audi R8 LMS Ultra | Team Taisan SARD | 2:00.2350 |
| 88 | Manabu Orido / Kazuki Hiramine | Lamborghini Huracán GT3 | JLOC | 2:00.5590 |