| 64 | Takuya Izawa / Hiroki Ootsu | Honda NSX-GT (NC1) | Modulo Nakajima Racing | 1:46.2390 |
| 23 | Tsugio Matsuda / Ronnie Quintarelli | Nissan GT-R (R35) | NISMO | 1:46.6990 |
| 38 | Yuuji Tachikawa / Hiroaki Ishiura | Toyota GR Supra (DB42) | TGR Team Zent Cerumo | 1:46.7690 |
| 14 | Kazuya Oshima / Syou Tsuboi | Toyota GR Supra (DB42) | TGR Team Wako's Rookie | 1:46.8990 |
| 16 | Hideki Mutou / Ukyo Sasahara | Honda NSX-GT (NC1) | Team Red Bull Mugen | 1:47.1470 |
| 19 | Yuuji Kunimoto / Ritomo Miyata | Toyota GR Supra (DB42) | TGR Team WedsSport Bandoh | 1:47.4170 |
| 17 | Koudai Tsukakoshi / Bertrand Baguette | Honda NSX-GT (NC1) | Keihin Real Racing | 1:47.6120 |
| 100 | Naoki Yamamoto / Tadasuke Makino | Honda NSX-GT (NC1) | Team Kunimitsu | 1:48.1220 |
| 31 | Kouki Saga / Yuuki Nakayama | Toyota GR Sport Prius PHV (ZVW52) | Apr | 1:58.1890 |
| 55 | Shinichi Takagi / Toshiki Ooyu | Honda NSX-GT3 (NC1) | ARTA | 1:58.4300 |
| 56 | Kiyoto Fujinami / Joao Paolo de Oliveira | Nissan GT-R Nismo GT3 (R35) | Kondo Racing | 1:58.8260 |
| 244 | Rintaro Kubo / Atsushi Miyake | Lexus RC F GT3 (USC10) | Max Racing | 1:58.8890 |
| 52 | Hiroki Yoshida / Kohta Kawaai | Toyota GR Supra (DB42) | Saitama Toyopet Green Brave | 1:58.8920 |
| 10 | Kazuki Hoshino / Keishi Ishikawa | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:58.9580 |
| 11 | Katsuyuki Hiranaka / Hironobu Yasuda | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:59.0870 |
| 21 | Shintarou Kawabata / Tsubasa Kondo | Audi R8 Coupe LMSFSI quattro (ABA-4SCSPD) | Audi Team Hitotsuyama | 1:59.1230 |
| 18 | Takashi Kobayashi / Kousuke Matsuura | Honda NSX-GT3 (NC1) | Team Upgarage | 1:59.1460 |
| 65 | Naoya Gamou / Tougo Suganami | Mercedes-AMG GT3 (C190) | K2 R&D Leon Racing | 1:59.2510 |
| 2 | Hiroki Katou / Masataka Yanagida | Lotus Evora (122) | Cars Tokai Dream28 | 1:59.5110 |
| 96 | Morio Nitta / Sena Sakaguchi | Lexus RC F GT3 (USC10) | K-tunes Racing | 1:59.6050 |
| 6 | Ryohei Sakaguchi / Kazuto Kotaka | Toyota 86MC (ZN6) | Advics Muta Racing Inging | 1:59.9350 |
| 34 | Ryou Michigami / Jake Parsons | Honda NSX-GT3 (NC1) | Modulo Drago Corse | 2:00.1110 |
| 7 | Seiji Ara / Tomohide Yamaguchi | BMW M6 GT3 (F13) | BMW Team Satudie x CSL | 2:00.5350 |
| 30 | Hiroaki Nagai / Manabu Orido | Toyota GR Sport Prius PHV (ZVW52) | Apr | 2:00.6860 |