| 64 | Takuya Izawa / Hiroki Ootsu | Honda NSX-GT (NC1) | Modulo Nakajima Racing | 1:45.1280 |
| 16 | Ukyo Sasahara / Toshiki Ooyu | Honda NSX-GT (NC1) | Team Red Bull Mugen | 1:45.3490 |
| 23 | Tsugio Matsuda / Ronnie Quintarelli | Nissan GT-R (R35) | NISMO | 1:45.7100 |
| 24 | Mitsunori Takaboshi / Daiki Sasaki | Nissan GT-R (R35) | Kondo Racing | 1:45.8610 |
| 8 | Tomoki Nojiri / Nirei Fukuzumi | Honda NSX-GT (NC1) | ARTA | 1:46.0300 |
| 17 | Koudai Tsukakoshi / Bertrand Baguette | Honda NSX-GT (NC1) | Astemo Real Racing | 1:46.1550 |
| 3 | Kouhei Hirate / Katsumasa Chiyo | Nissan GT-R (R35) | NDDP Racing with B-Max | 1:46.2890 |
| 12 | Kazuki Hiramine / Nobuharu Matsushita | Nissan GT-R (R35) | Team Impul | 1:49.0720 |
| 61 | Takuto Iguchi / Hideki Yamauchi | Subaru BRZ GT300 | R&D Sport | 1:57.3220 |
| 5 | Yuuya Hiraki / Reiji Hiraki | Toyota 86MC (ZN6) | Team Mach | 1:57.8210 |
| 244 | Atsushi Miyake / Yuui Tsutsumi | Toyota GR Supra (DB42) | Max Racing | 1:57.8750 |
| 88 | Takashi Kogure / Yuya Motojima | Lamborghini Huracán GT3 | JLOC | 1:58.3040 |
| 4 | Nobuteru Taniguchi / Tatsuya Kataoka | Mercedes-AMG GT3 | Goodsmile Racing & Team Ukyo | 1:58.6140 |
| 9 | Kei Cozzolino / Naoki Yokomizo | Ferrari 488 GT3 Evo | Pacific Carguy Racing | 1:58.7220 |
| 2 | Hiroki Katou / Ryohei Sakaguchi | Lotus Evora (122) | Muta Racing Inging | 1:58.8560 |
| 21 | Shintarou Kawabata / Takuro Shinohara | Audi R8 LMS FSI quattro (ABA-4SCSPD) | Audi Team Hitotsuyama | 1:59.1760 |
| 30 | Hiroaki Nagai / Manabu Orido | Toyota GR Sport Prius PHV (ZVW52) | Apr | 1:59.3230 |
| 10 | Kazuki Hoshino / Keishi Ishikawa | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:59.3780 |
| 34 | Ryou Michigami / Shogo Mitsuyama | Honda NSX-GT3 (NC1) | Yogibo Drago Corse | 1:59.3780 |
| 6 | Satoshi Motoyama / Yoshiaki Katayama | Audi R8 Coupe V10 plus 5.2 FSI quattro | Team LeMans with Motoyama Racing | 1:59.5560 |
| 35 | Sean Walkinshaw / Giuliano Alesi | Lexus RC F GT3 (USC10) | Arto Team Thailand | 2:00.2230 |
| 7 | Seiji Ara / Tomohide Yamaguchi | BMW M6 GT3 (F13) | BMW Team Satudie x CSL | 2:00.2370 |
| 360 | Takayuki Aoki / Yudai Uchida | Nissan GT-R Nismo GT3 (R35) | Tomei Sports | 2:00.5070 |
| 48 | Yuuki Tanaka / Ryuichiro Tomita | Nissan GT-R Nismo GT3 (R35) | Nilzz Racing | 2:02.4990 |