| 8 | di Grassi / Duval / Jarvis | Audi R18 | Audi Sport Team Joest | 3:21.3750 | 243.6000 | 86 | 3:22.7970 | 3:21.3750 |
| 1 | Bernhard / Webber / Hartley | Porsche 919 Hybrid | Porsche Team | 3:22.2700 | 242.6000 | 90 | 3:22.5550 | 3:22.2700 |
| 2 | Dumas / Jani / Lieb | Porsche 919 Hybrid | Porsche Team | 3:22.3340 | 242.5000 | 83 | 3:22.3340 | 3:22.4530 |
| 7 | Lotterer / Fässler / Tréluyer | Audi R18 | Audi Sport Team Joest | 3:22.5880 | 242.2000 | 52 | 3:22.7610 | 3:22.5880 |
| 5 | Davidson / Buemi / Nakajima / Wurz | Toyota TS050 Hybrid | Toyota Gazoo Racing | 3:23.1970 | 241.5000 | 82 | 3:23.1970 | 3:25.3240 |
| 6 | Sarrazin / Conway / Kobayashi / Wurz | Toyota TS050 Hybrid | Toyota Gazoo Racing | 3:23.7210 | 240.8000 | 97 | 3:23.7210 | 3:24.1820 |
| 13 | Tuscher / Imperatori / Kraihamer | Rebellion R-One AER | Rebellion Racing | 3:27.0620 | 237.0000 | 89 | 3:27.0620 | 3:28.2560 |
| 12 | Prost / Heidfeld / Piquet, Jr. | Rebellion R-One AER | Rebellion Racing | 3:27.1170 | 236.9000 | 84 | 3:27.1170 | 3:28.6240 |
| 4 | Kaffer / Trummer / Webb | CLM P1/01 AER | Bykolles Racing Team | 3:33.0250 | 230.3000 | 77 | 3:33.5600 | 3:33.0250 |
| 33 | Gommendy / Jun Jin / Pieter de Bruijn | Oreca 05 Nissan | Eurasia Motorsport | 3:36.6900 | 226.4000 | 74 | 3:37.5430 | 3:36.6900 |
| 36 | Menezes / Lapierre / Richelmi | Alpine A460 Nissan | Signatech Alpine | 3:37.3970 | 225.7000 | 81 | 3:37.3970 | 3:37.6850 |
| 26 | Rusinov / Rast / Stevens / Brundle | Oreca 05 Nissan | G-Drive Racing | 3:37.5030 | 225.6000 | 66 | 3:39.2910 | 3:37.5030 |
| 38 | Dolan / Van Der Garde / Dennis | Gibson 015S Nissan | G-Drive Racing | 3:37.5810 | 225.5000 | 89 | 3:39.8960 | 3:37.5810 |
| 44 | Graves / Rao / Merhi | Oreca 05 Nissan | Manor | 3:38.3830 | 224.7000 | 61 | 3:38.3830 | 3:39.3020 |
| 47 | Matsuda / Howson / Bradley | Oreca 05 Nissan | KCMG | 3:38.4860 | 224.6000 | 70 | 3:39.6460 | 3:38.4860 |
| 46 | Thiriet / Beche / Hirakawa | Oreca 05 Nissan | Thiriet By Tds Racing | 3:38.5810 | 224.5000 | 72 | 3:40.6880 | 3:38.5810 |
| 49 | Pew / Negri / Vanthoor | Ligier JS P2 Honda | Michael Shank Racing | 3:38.5890 | 224.5000 | 75 | 3:39.9790 | 3:38.5890 |
| 35 | Cheng / Panciatici / Tung | Alpine A460 Nissan | Baxi DC Racing Alpine | 3:39.2980 | 223.7000 | 69 | 3:39.2980 | 3:39.8390 |
| 27 | Minassian / Wirth / Mediani | BR 01 Nissan | SMP Racing | 3:39.8040 | 223.2000 | 61 | 3:39.8040 | 3:44.6070 |
| 23 | Barthez / Chatin / Buret / Gachet | Ligier JS P2 Nissan | Panis Barthez Competition | 3:39.9140 | 223.1000 | 70 | 3:39.9140 | 3:42.1950 |
| 37 | Petrov / Shaytar / Ladygin | BR 01 Nissan | SMP Racing | 3:39.9660 | 223.1000 | 62 | 3:39.9660 | 3:40.4960 |
| 31 | Derani / Cumming | Ligier JS P2 Nissan | Extreme Speed Motorsports | 3:40.2390 | 222.8000 | 51 | 3:42.5550 | 3:40.2390 |
| 42 | Leventis / Watts / Kane | Gibson 015S Nissan | Strakka Racing | 3:41.3710 | 221.6000 | 82 | 3:41.3710 | 3:41.8060 |
| 41 | Rojas / Canal / Lancaster | Ligier JS P2 Nissan | Greaves Motorsport | 3:41.6250 | 221.4000 | 77 | 3:41.9380 | 3:41.6250 |
| 40 | Krohn / Jönsson | Ligier JS P2 Nissan | Krohn Racing | 3:41.9020 | 221.1000 | 62 | 3:41.9020 | 3:43.1220 |
| 48 | Keating / Bleekemolen / Goossens | Oreca 03R Nissan | Murphy Prototypes | 3:42.5370 | 220.5000 | 58 | 3:47.4010 | 3:42.5370 |
| 43 | Gonzalez / Senna / Albuquerque | Ligier JS P2 Nissan | RGR Sport By Morand | 3:42.5680 | 220.4000 | 46 | 3:42.5680 | 3:44.8080 |
| 25 | Munemann / Pizzitola / Hoy | Ligier JS P2 Nissan | Algarve Pro Racing | 3:42.5920 | 220.4000 | 88 | 3:42.5920 | 3:42.7920 |
| 28 | Taittinger / Striebig / Roussel | Morgan LM P2 Nissan | Pegasus Racing | 3:42.6340 | 220.4000 | 72 | 3:42.8470 | 3:42.6340 |
| 30 | Sharp / Brown / Van Overbeek | Ligier JS P2 Nissan | Extreme Speed Motorsports | 3:44.1930 | 218.8000 | 66 | 3:45.8130 | 3:44.1930 |
| 34 | Leutwiler / Nakano / Winslow / Koutsoumidis | Oreca 03R Judd | Race Performance | 3:45.4550 | 217.6000 | 74 | 3:45.7410 | 3:45.4550 |
| 22 | Capillaire / Coleman / Maris / Lombard | Ligier JS P2 Judd | SO24 ! By Lombard Racing | 3:45.5870 | 217.5000 | 52 | 3:52.4740 | 3:45.5870 |
| 84 | Sausset / Tinseau / Bouvet | Morgan LM P2 Nissan | SRT41 By OAK Racing | 3:48.2530 | 215.0000 | 54 | 3:49.1850 | 3:48.2530 |
| 63 | Magnussen / Garcia / Taylor | Chevrolet Corvette C7.R | Corvette Racing - GM | 3:55.1220 | 208.7000 | 73 | 3:56.6270 | 3:55.1220 |
| 91 | Pilet / Estre / Tandy | Porsche 991 RSR (2016) | Porsche Motorsport | 3:55.4020 | 208.4000 | 61 | 3:56.2020 | 3:55.4020 |
| 92 | Makowiecki / Bamber / Bergmeister | Porsche 991 RSR (2016) | Porsche Motorsport | 3:55.6910 | 208.2000 | 70 | 3:55.6910 | 3:56.0120 |
| 64 | Gavin / Milner / Taylor | Chevrolet Corvette C7.R | Corvette Racing - GM | 3:55.8370 | 208.0000 | 81 | 3:56.3260 | 3:55.8370 |
| 51 | Bruni / Calado / Pier Guidi | Ferrari 488 GTE | AF Corse | 3:55.9000 | 208.0000 | 52 | 3:56.5810 | 3:55.9000 |
| 69 | Briscoe / Westbrook | Ford GT | Ford Chip Ganassi Team USA | 3:56.0390 | 207.9000 | 55 | 3:56.7090 | 3:56.0390 |
| 71 | Bertolini / Rigon / Bird | Ferrari 488 GTE | AF Corse | 3:56.1150 | 207.8000 | 54 | 3:57.3280 | 3:56.1150 |
| 66 | Pla / Mücke / Johnson | Ford GT | Ford Chip Ganassi Team UK | 3:56.1670 | 207.8000 | 76 | 3:56.6800 | 3:56.1670 |
| 82 | Fisichella / Vilander / Malucelli | Ferrari 488 GTE | Risi Competizione | 3:56.1700 | 207.8000 | 51 | 3:56.3990 | 3:56.1700 |
| 95 | Sørensen / Thiim / Turner | Aston Martin V8 Vantage GTE | Aston Martin Racing | 3:56.1910 | 207.7000 | 80 | 3:56.7240 | 3:56.1910 |
| 97 | Stanaway / Rees / Adam | Aston Martin V8 Vantage GTE | Aston Martin Racing | 3:56.5230 | 207.4000 | 55 | 3:59.8240 | 3:56.5230 |
| 67 | Franchitti / Priaulx / Tincknell | Ford GT | Ford Chip Ganassi Team UK | 3:56.5960 | 207.4000 | 74 | 3:56.7720 | 3:56.5960 |
| 68 | Hand / Müller | Ford GT | Ford Chip Ganassi Team USA | 3:56.6300 | 207.3000 | 43 | 3:56.7920 | 3:56.6300 |
| 77 | Lietz / Eng / Christensen / Bachler | Porsche 991 RSR (2016) | Dempsey - Proton Racing | 3:56.9900 | 207.0000 | 62 | 3:56.9900 | 3:57.1470 |
| 50 | Yamagishi / Ragues / Belloc / Catsburg | Chevrolet Corvette C7-Z06 | Larbre Competition | 3:57.9990 | 206.2000 | 75 | 3:59.8990 | 3:57.9990 |
| 55 | Cameron / Griffin / Scott | Ferrari 458 Italia | AF Corse | 3:58.8690 | 205.4000 | 81 | 3:58.8690 | 4:01.6900 |
| 62 | Sweedler / Bell / Segal | Ferrari 458 Italia | Scuderia Corsa | 3:58.9810 | 205.3000 | 53 | 3:58.9810 | 4:02.3470 |
| 61 | Mok / Sawa / Bell | Ferrari 458 Italia | Clearwater Racing | 3:59.3000 | 205.0000 | 83 | 4:02.5120 | 3:59.3000 |
| 83 | Perrodo / Collard / Aguas | Ferrari 458 Italia | AF Corse | 3:59.3130 | 205.0000 | 78 | 3:59.4980 | 3:59.3130 |
| 98 | Dalla Lana / Lamy / Lauda | Aston Martin V8 Vantage GTE | Aston Martin Racing | 3:59.3370 | 205.0000 | 78 | 3:59.3370 | 4:00.8080 |
| 78 | Ried / Henzler / Camathias | Porsche 991 RSR | KCMG | 3:59.3740 | 205.0000 | 50 | 3:59.3740 | 4:01.4220 |
| 86 | Wainwright / Carroll / Barker | Porsche 991 RSR | Gulf Racing | 3:59.4330 | 204.9000 | 68 | 4:00.9120 | 3:59.4330 |
| 60 | Laursen / Mac Jensen / Nielsen | Ferrari 458 Italia | Formula Racing | 4:00.4150 | 204.1000 | 82 | 4:00.4150 | 4:03.3180 |
| 89 | MacNeil / Keen / Miller / Jeannette | Porsche 991 RSR | Proton Competition | 4:01.2580 | 203.4000 | 72 | 4:01.7450 | 4:01.2580 |
| 88 | Al Qubaisi / Heinemeier Hansson / Long | Porsche 991 RSR | Abu Dhabi-Proton Racing | 4:01.7730 | 202.9000 | 71 | 4:01.7730 | 4:02.3180 |
| 57 | O'Connell / Bryant / Patterson | Chevrolet Corvette C7-Z06 | Team AAI | 4:02.1090 | 202.7000 | 52 | 4:12.1850 | 4:02.1090 |
| 99 | Howard / Griffin / Hirsch | Aston Martin V8 Vantage GTE | Aston Martin Racing | 4:03.8960 | 201.2000 | 49 | 4:03.8960 | 4:13.0430 |